1 HisKA#1
187-254 aa · 68 aa · 16.5% of protein
Raw token
HisKA:187:0.0000000000000303:254:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5V76_RS02950
Histidine kinase, Classic
Bacillus mycoides · GCF_018742205
ClassHKTypeClassicLength412 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018742205#J5V76_RS02950Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length412 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 412 aa (43.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
299-410 aa · 112 aa · 27.2% of protein
Raw token
HATPase_c:299:6.73e-31:410:112:109- Raw architecture: HisKA:187:0.0000000000000303:254:68:64#HATPase_c:299:6.73e-31:410:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018742205::NZ_CP072065.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span573756-575677Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5V76_02950RefSeq proteinWP_215587231.1
Context group ID
GCF_018742205::NZ_CP072065.1::G00006Context members
J5V76_RS02945J5V76_RS02950
Partner locus tags
J5V76_RS02945J5V76_RS02950
Partner old locus tags
J5V76_02945J5V76_02950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215587231.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5V76_RS02950Primary locus identifier stored in the genes table.
Old locus tagJ5V76_02950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072065.1Sequence record reported by the local genomic context database.
Genomic interval574 439-575 677 nt1 239 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span573 756-575 677 ntGCF_018742205::NZ_CP072065.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742205::NZ_CP072065.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072065.1All displayed genes belong to this local TCS context.
Neighborhood span573 756-575 677 nt1 922 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
573 756 nt575 677 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5V76_RS02945GCF_018742205#J5V76_RS02945
RROmpR
573 756-574 427 nt · Forward (+)
J5V76_RS02950GCF_018742205#J5V76_RS02950
HKClassicCurrent focus
574 439-575 677 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018739385#EXW60_RS13430Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2339633
Simplified PFAM architecture for HKOC_2339633
PFAM domain coverage: 177 / 412 aa (43.0%)
1 aa412 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[188-253] | HATPase_c[299-409]
- Domain count: 2
- Matched identifier: HKOC_2339633
- Positioned domains: HisKA 188-253 ; HATPase_c 299-409
Cluster members and taxonomy
Representative gene: GCF_018739385#EXW60_RS13430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742205
AssemblyASM1874220v1 · Complete Genomehaploid
Genome composition5 717 907 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 117 · HK 62 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key