1 Response_reg#1
4-114 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:4:6.81e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5V93_RS28440
Response regulator OmpR family
Bacillus mycoides · GCF_018742185
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018742185#J5V93_RS28440Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 225 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 34.2% of protein
Raw token
Trans_reg_C:148:2.44e-29:224:77:77- Raw architecture: Response_reg:4:6.81e-34:114:111:111#Trans_reg_C:148:2.44e-29:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018742185::NZ_CP072062.1::G00078
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span210480-211157Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5V93_28440RefSeq proteinWP_215561271.1
Context group ID
GCF_018742185::NZ_CP072062.1::G00078Context members
J5V93_RS28440
Partner locus tags
J5V93_RS28440
Partner old locus tags
J5V93_28440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215561271.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5V93_RS28440Primary locus identifier stored in the genes table.
Old locus tagJ5V93_28440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072062.1Sequence record reported by the local genomic context database.
Genomic interval210 480-211 157 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span210 480-211 157 ntGCF_018742185::NZ_CP072062.1::G00078
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742185::NZ_CP072062.1::G00078Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072062.1All displayed genes belong to this local TCS context.
Neighborhood span210 480-211 157 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
210 480 nt211 157 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J5V93_RS28440GCF_018742185#J5V93_RS28440
RROmpRCurrent focus
210 480-211 157 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741145#EXW44_RS28560Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1494872
Simplified PFAM architecture for RROC_1494872
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1494872
- Positioned domains: Response_reg 4-114 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_018741145#EXW44_RS28560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742185
AssemblyASM1874218v1 · Complete Genomehaploid
Genome composition5 938 126 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 70 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key