1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:1.4e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5V93_RS28000
Response regulator OmpR family
Bacillus mycoides · GCF_018742185
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018742185#J5V93_RS28000Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:154:3.73e-32:229:76:77- Raw architecture: Response_reg:5:1.4e-38:114:111:111#Trans_reg_C:154:3.73e-32:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018742185::NZ_CP072062.1::G00076
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96961-98750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5V93_28000RefSeq proteinWP_215561228.1
Context group ID
GCF_018742185::NZ_CP072062.1::G00076Context members
J5V93_RS28000J5V93_RS28005
Partner locus tags
J5V93_RS28000J5V93_RS28005
Partner old locus tags
J5V93_28000J5V93_28005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215561228.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5V93_RS28000Primary locus identifier stored in the genes table.
Old locus tagJ5V93_28000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072062.1Sequence record reported by the local genomic context database.
Genomic interval96 961-97 674 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 961-98 750 ntGCF_018742185::NZ_CP072062.1::G00076
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742185::NZ_CP072062.1::G00076Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072062.1All displayed genes belong to this local TCS context.
Neighborhood span96 961-98 750 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 961 nt98 750 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5V93_RS28000GCF_018742185#J5V93_RS28000
RROmpRCurrent focus
96 961-97 674 nt · Forward (+)
J5V93_RS28005GCF_018742185#J5V93_RS28005
HKClassic
97 671-98 750 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741145#EXW44_RS28110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0974629
Simplified PFAM architecture for RROC_0974629
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0974629
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_018741145#EXW44_RS28110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742185
AssemblyASM1874218v1 · Complete Genomehaploid
Genome composition5 938 126 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 70 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key