1 HisKA_3#1
502-562 aa · 61 aa · 8.6% of protein
Raw token
HisKA_3:502:0.0000021:562:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5V93_RS15145
Histidine kinase, Classic
Bacillus mycoides · GCF_018742185
ClassHKTypeClassicLength713 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018742185#J5V93_RS15145Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length713 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 713 aa (21.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa713 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
605-699 aa · 95 aa · 13.3% of protein
Raw token
HATPase_c:605:1.61e-20:699:105:109- Raw architecture: HisKA_3:502:0.0000021:562:65:68#HATPase_c:605:1.61e-20:699:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018742185::NZ_CP072061.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2986662-2989383Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5V93_15145RefSeq proteinWP_033730040.1
Context group ID
GCF_018742185::NZ_CP072061.1::G00048Context members
J5V93_RS15145J5V93_RS15150
Partner locus tags
J5V93_RS15145J5V93_RS15150
Partner old locus tags
J5V93_15145J5V93_15150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033730040.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8BEM4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8BEM4_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5V93_RS15145Primary locus identifier stored in the genes table.
Old locus tagJ5V93_15145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072061.1Sequence record reported by the local genomic context database.
Genomic interval2 986 662-2 988 803 nt2 142 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 986 662-2 989 383 ntGCF_018742185::NZ_CP072061.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742185::NZ_CP072061.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072061.1All displayed genes belong to this local TCS context.
Neighborhood span2 986 662-2 989 383 nt2 722 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 986 662 nt2 989 383 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5V93_RS15145GCF_018742185#J5V93_RS15145
HKClassicCurrent focus
2 986 662-2 988 803 nt · Forward (+)
J5V93_RS15150GCF_018742185#J5V93_RS15150
RRNarL
2 988 775-2 989 383 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000517985#C174_RS09180Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0745544
Simplified PFAM architecture for HKOC_0745544
PFAM domain coverage: 95 / 713 aa (13.3%)
1 aa713 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[605-699]
- Domain count: 1
- Matched identifier: HKOC_0745544
- Positioned domains: HATPase_c 605-699
Cluster members and taxonomy
Representative gene: GCF_000517985#C174_RS09180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742185
AssemblyASM1874218v1 · Complete Genomehaploid
Genome composition5 938 126 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 70 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key