1 HAMP#1
67-126 aa · 60 aa · 16.5% of protein
Raw token
HAMP:67:0.000000361:126:60:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5W00_RS15345
Histidine kinase, Classic
Bacillus mycoides · GCF_018742105
ClassHKTypeClassicLength364 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018742105#J5W00_RS15345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length364 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 364 aa (65.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa364 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-204 aa · 68 aa · 18.7% of protein
Raw token
HisKA:137:0.00000000000259:204:68:643 HATPase_c#3
249-360 aa · 112 aa · 30.8% of protein
Raw token
HATPase_c:249:1.47e-24:360:113:109- Raw architecture: HAMP:67:0.000000361:126:60:69#HisKA:137:0.00000000000259:204:68:64#HATPase_c:249:1.47e-24:360:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018742105::NZ_CP072055.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3014643-3016428Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5W00_15345RefSeq proteinWP_103458754.1
Context group ID
GCF_018742105::NZ_CP072055.1::G00045Context members
J5W00_RS15345J5W00_RS15350
Partner locus tags
J5W00_RS15345J5W00_RS15350
Partner old locus tags
J5W00_15345J5W00_15350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103458754.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8GR86Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8GR86_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5W00_RS15345Primary locus identifier stored in the genes table.
Old locus tagJ5W00_15345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072055.1Sequence record reported by the local genomic context database.
Genomic interval3 014 643-3 015 737 nt1 095 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 014 643-3 016 428 ntGCF_018742105::NZ_CP072055.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742105::NZ_CP072055.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072055.1All displayed genes belong to this local TCS context.
Neighborhood span3 014 643-3 016 428 nt1 786 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 014 643 nt3 016 428 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5W00_RS15345GCF_018742105#J5W00_RS15345
HKClassicCurrent focus
3 014 643-3 015 737 nt · Reverse (-)
J5W00_RS15350GCF_018742105#J5W00_RS15350
RROmpR
3 015 730-3 016 428 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002909185#BACWE_RS30550Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2725845
Simplified PFAM architecture for HKOC_2725845
PFAM domain coverage: 222 / 364 aa (61.0%)
1 aa364 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[81-125] | HisKA[138-203] | HATPase_c[249-359]
- Domain count: 3
- Matched identifier: HKOC_2725845
- Positioned domains: HAMP 81-125 ; HisKA 138-203 ; HATPase_c 249-359
Cluster members and taxonomy
Representative gene: GCF_002909185#BACWE_RS30550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742105
AssemblyASM1874210v1 · Complete Genomehaploid
Genome composition5 821 266 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key