1 HAMP#1
171-241 aa · 71 aa · 15.0% of protein
Raw token
HAMP:171:0.000000000533:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5W00_RS13225
Histidine kinase, Classic
Bacillus mycoides · GCF_018742105
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018742105#J5W00_RS13225Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 472 aa (52.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-310 aa · 66 aa · 14.0% of protein
Raw token
HisKA:245:7.72e-16:310:66:643 HATPase_c#3
362-470 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:362:4.69e-27:470:109:109- Raw architecture: HAMP:171:0.000000000533:241:71:69#HisKA:245:7.72e-16:310:66:64#HATPase_c:362:4.69e-27:470:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018742105::NZ_CP072055.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2630352-2632441Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5W00_13225RefSeq proteinWP_215561149.1
Context group ID
GCF_018742105::NZ_CP072055.1::G00039Context members
J5W00_RS13225J5W00_RS13230
Partner locus tags
J5W00_RS13225J5W00_RS13230
Partner old locus tags
J5W00_13225J5W00_13230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215561149.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5W00_RS13225Primary locus identifier stored in the genes table.
Old locus tagJ5W00_13225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072055.1Sequence record reported by the local genomic context database.
Genomic interval2 630 352-2 631 770 nt1 419 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 630 352-2 632 441 ntGCF_018742105::NZ_CP072055.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742105::NZ_CP072055.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072055.1All displayed genes belong to this local TCS context.
Neighborhood span2 630 352-2 632 441 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 630 352 nt2 632 441 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5W00_RS13225GCF_018742105#J5W00_RS13225
HKClassicCurrent focus
2 630 352-2 631 770 nt · Reverse (-)
J5W00_RS13230GCF_018742105#J5W00_RS13230
RROmpR
2 631 767-2 632 441 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741565#EXW47_RS13220Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1701352
Simplified PFAM architecture for HKOC_1701352
PFAM domain coverage: 351 / 472 aa (74.4%)
1 aa472 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-310] | HATPase_c[361-469]
- Domain count: 4
- Matched identifier: HKOC_1701352
- Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-310 ; HATPase_c 361-469
Cluster members and taxonomy
Representative gene: GCF_018741565#EXW47_RS13220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742105
AssemblyASM1874210v1 · Complete Genomehaploid
Genome composition5 821 266 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key