1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:6.85e-20:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5W00_RS08770
Histidine kinase, Classic
Bacillus mycoides · GCF_018742105
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018742105#J5W00_RS08770Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.000000000135:365:97:109- Raw architecture: HisKA_3:177:6.85e-20:244:68:68#HATPase_c:289:0.000000000135:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018742105::NZ_CP072055.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1696491-1698234Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5W00_08770RefSeq proteinWP_002126710.1
Context group ID
GCF_018742105::NZ_CP072055.1::G00025Context members
J5W00_RS08765J5W00_RS08770
Partner locus tags
J5W00_RS08765J5W00_RS08770
Partner old locus tags
J5W00_08765J5W00_08770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002126710.1Primary protein accession used for annex mappings.
UniProt accessionA0A084J698Primary UniProt accession resolved in the annex database.
UniProt IDA0A084J698_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5W00_RS08770Primary locus identifier stored in the genes table.
Old locus tagJ5W00_08770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072055.1Sequence record reported by the local genomic context database.
Genomic interval1 697 134-1 698 234 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 696 491-1 698 234 ntGCF_018742105::NZ_CP072055.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742105::NZ_CP072055.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072055.1All displayed genes belong to this local TCS context.
Neighborhood span1 696 491-1 698 234 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 696 491 nt1 698 234 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5W00_RS08765GCF_018742105#J5W00_RS08765
RRNarL
1 696 491-1 697 129 nt · Forward (+)
J5W00_RS08770GCF_018742105#J5W00_RS08770
HKClassicCurrent focus
1 697 134-1 698 234 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS08610Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2711932
Simplified PFAM architecture for HKOC_2711932
PFAM domain coverage: 67 / 366 aa (18.3%)
1 aa366 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[177-243]
- Domain count: 1
- Matched identifier: HKOC_2711932
- Positioned domains: HisKA_3 177-243
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS08610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742105
AssemblyASM1874210v1 · Complete Genomehaploid
Genome composition5 821 266 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key