1 HAMP#1
168-234 aa · 67 aa · 14.4% of protein
Raw token
HAMP:168:4.55e-16:234:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5W00_RS06535
Histidine kinase, Classic
Bacillus mycoides · GCF_018742105
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018742105#J5W00_RS06535Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 466 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.4% of protein
Raw token
HisKA:238:1.79e-18:304:67:643 HATPase_c#3
350-460 aa · 111 aa · 23.8% of protein
Raw token
HATPase_c:350:3.52e-33:460:111:109- Raw architecture: HAMP:168:4.55e-16:234:67:69#HisKA:238:1.79e-18:304:67:64#HATPase_c:350:3.52e-33:460:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018742105::NZ_CP072055.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1281855-1283930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5W00_06535RefSeq proteinWP_201051618.1
Context group ID
GCF_018742105::NZ_CP072055.1::G00016Context members
J5W00_RS06530J5W00_RS06535
Partner locus tags
J5W00_RS06530J5W00_RS06535
Partner old locus tags
J5W00_06530J5W00_06535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201051618.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5W00_RS06535Primary locus identifier stored in the genes table.
Old locus tagJ5W00_06535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072055.1Sequence record reported by the local genomic context database.
Genomic interval1 282 530-1 283 930 nt1 401 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 281 855-1 283 930 ntGCF_018742105::NZ_CP072055.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742105::NZ_CP072055.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072055.1All displayed genes belong to this local TCS context.
Neighborhood span1 281 855-1 283 930 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 281 855 nt1 283 930 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5W00_RS06530GCF_018742105#J5W00_RS06530
RROmpR
1 281 855-1 282 526 nt · Forward (+)
J5W00_RS06535GCF_018742105#J5W00_RS06535
HKClassicCurrent focus
1 282 530-1 283 930 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651125#JFT95_RS04720Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1766774
Simplified PFAM architecture for HKOC_1766774
PFAM domain coverage: 224 / 466 aa (48.1%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-233] | HisKA[239-303] | HATPase_c[350-460]
- Domain count: 3
- Matched identifier: HKOC_1766774
- Positioned domains: HAMP 186-233 ; HisKA 239-303 ; HATPase_c 350-460
Cluster members and taxonomy
Representative gene: GCF_016651125#JFT95_RS04720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742105
AssemblyASM1874210v1 · Complete Genomehaploid
Genome composition5 821 266 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key