1 GAF#1
23-163 aa · 141 aa · 21.1% of protein
Raw token
GAF:23:0.00000000000000281:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5W00_RS01815
Histidine kinase, Classic
Bacillus mycoides · GCF_018742105
ClassHKTypeClassicLength668 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018742105#J5W00_RS01815Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_9HisKAHATPase_c
Protein length668 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage392 / 668 aa (58.7%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa668 aa
Domain-by-domain annotation4 items
2 PAS_9#2
343-437 aa · 95 aa · 14.2% of protein
Raw token
PAS_9:343:0.00000263:437:107:1023 HisKA#3
455-512 aa · 58 aa · 8.7% of protein
Raw token
HisKA:455:0.0000000000000111:512:58:644 HATPase_c#4
564-661 aa · 98 aa · 14.7% of protein
Raw token
HATPase_c:564:3.9e-19:661:103:109- Raw architecture: GAF:23:0.00000000000000281:163:143:133#PAS_9:343:0.00000263:437:107:102#HisKA:455:0.0000000000000111:512:58:64#HATPase_c:564:3.9e-19:661:103:109
- Domain description: 1 GAF,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018742105::NZ_CP072055.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span333361-335367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5W00_01815RefSeq proteinWP_215560867.1
Context group ID
GCF_018742105::NZ_CP072055.1::G00003Context members
J5W00_RS01815
Partner locus tags
J5W00_RS01815
Partner old locus tags
J5W00_01815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215560867.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5W00_RS01815Primary locus identifier stored in the genes table.
Old locus tagJ5W00_01815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072055.1Sequence record reported by the local genomic context database.
Genomic interval333 361-335 367 nt2 007 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span333 361-335 367 ntGCF_018742105::NZ_CP072055.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742105::NZ_CP072055.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072055.1All displayed genes belong to this local TCS context.
Neighborhood span333 361-335 367 nt2 007 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
333 361 nt335 367 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J5W00_RS01815GCF_018742105#J5W00_RS01815
HKClassicCurrent focus
333 361-335 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741565#EXW47_RS01910Use this link to inspect the representative gene detail.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0852296
Simplified PFAM architecture for HKOC_0852296
PFAM domain coverage: 300 / 668 aa (44.9%)
1 aa668 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | HisKA[455-512] | HATPase_c[561-662]
- Domain count: 3
- Matched identifier: HKOC_0852296
- Positioned domains: GAF 24-163 ; HisKA 455-512 ; HATPase_c 561-662
Cluster members and taxonomy
Representative gene: GCF_018741565#EXW47_RS01910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742105
AssemblyASM1874210v1 · Complete Genomehaploid
Genome composition5 821 266 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key