1 GAF#1
23-163 aa · 141 aa · 21.0% of protein
Raw token
GAF:23:0.00000000000000589:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5V73_RS01940
Histidine kinase, Classic
Bacillus mycoides · GCF_018742045
ClassHKTypeClassicLength672 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018742045#J5V73_RS01940Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_9HisKAHATPase_c
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage390 / 672 aa (58.0%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation4 items
2 PAS_9#2
347-441 aa · 95 aa · 14.1% of protein
Raw token
PAS_9:347:0.00000378:441:107:1023 HisKA#3
459-514 aa · 56 aa · 8.3% of protein
Raw token
HisKA:459:0.0000000000000173:514:56:644 HATPase_c#4
568-665 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:568:3.8e-19:665:103:109- Raw architecture: GAF:23:0.00000000000000589:163:143:133#PAS_9:347:0.00000378:441:107:102#HisKA:459:0.0000000000000173:514:56:64#HATPase_c:568:3.8e-19:665:103:109
- Domain description: 1 GAF,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018742045::NZ_CP072057.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span365241-367259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5V73_01940RefSeq proteinWP_131246566.1
Context group ID
GCF_018742045::NZ_CP072057.1::G00004Context members
J5V73_RS01940
Partner locus tags
J5V73_RS01940
Partner old locus tags
J5V73_01940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131246566.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5V73_RS01940Primary locus identifier stored in the genes table.
Old locus tagJ5V73_01940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072057.1Sequence record reported by the local genomic context database.
Genomic interval365 241-367 259 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span365 241-367 259 ntGCF_018742045::NZ_CP072057.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742045::NZ_CP072057.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072057.1All displayed genes belong to this local TCS context.
Neighborhood span365 241-367 259 nt2 019 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
365 241 nt367 259 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J5V73_RS01940GCF_018742045#J5V73_RS01940
HKClassicCurrent focus
365 241-367 259 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004330345#E0M27_RS15460Use this link to inspect the representative gene detail.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0840094
Simplified PFAM architecture for HKOC_0840094
PFAM domain coverage: 299 / 672 aa (44.5%)
1 aa672 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | HisKA[459-515] | HATPase_c[565-666]
- Domain count: 3
- Matched identifier: HKOC_0840094
- Positioned domains: GAF 24-163 ; HisKA 459-515 ; HATPase_c 565-666
Cluster members and taxonomy
Representative gene: GCF_004330345#E0M27_RS15460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742045
AssemblyASM1874204v1 · Complete Genomehaploid
Genome composition5 491 933 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 75 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key