1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:1.41e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW43_RS02320
Response regulator OmpR family
Bacillus mycoides · GCF_018741645
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018741645#EXW43_RS02320Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:154:9.39e-36:230:77:77- Raw architecture: Response_reg:6:1.41e-36:115:111:111#Trans_reg_C:154:9.39e-36:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018741645::NZ_CP036117.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span294254-295970Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW43_02425RefSeq proteinWP_215576047.1
Context group ID
GCF_018741645::NZ_CP036117.1::G00003Context members
EXW43_RS02315EXW43_RS02320
Partner locus tags
EXW43_RS02315EXW43_RS02320
Partner old locus tags
EXW43_02420EXW43_02425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215576047.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW43_RS02320Primary locus identifier stored in the genes table.
Old locus tagEXW43_02425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036117.1Sequence record reported by the local genomic context database.
Genomic interval295 257-295 970 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span294 254-295 970 ntGCF_018741645::NZ_CP036117.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018741645::NZ_CP036117.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036117.1All displayed genes belong to this local TCS context.
Neighborhood span294 254-295 970 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
294 254 nt295 970 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW43_RS02315GCF_018741645#EXW43_RS02315
HKClassic
294 254-295 267 nt · Reverse (-)
EXW43_RS02320GCF_018741645#EXW43_RS02320
RROmpRCurrent focus
295 257-295 970 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741645#EXW43_RS02320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0974633
Simplified PFAM architecture for RROC_0974633
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_0974633
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_018741645#EXW43_RS02320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018741645
AssemblyASM1874164v1 · Complete Genomehaploid
Genome composition6 014 015 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 69 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key