1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:2.5e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW46_RS27405
Response regulator OmpR family
Bacillus mycoides · GCF_018741505
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018741505#EXW46_RS27405Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 231 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.0% of protein
Raw token
Trans_reg_C:150:6.6e-30:223:76:77- Raw architecture: Response_reg:5:2.5e-35:114:111:111#Trans_reg_C:150:6.6e-30:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018741505::NZ_CP036086.1::G00078
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117016-119152Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW46_28065RefSeq proteinWP_063225875.1
Context group ID
GCF_018741505::NZ_CP036086.1::G00078Context members
EXW46_RS27400EXW46_RS27405
Partner locus tags
EXW46_RS27400EXW46_RS27405
Partner old locus tags
EXW46_28060EXW46_28065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_063225875.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW46_RS27405Primary locus identifier stored in the genes table.
Old locus tagEXW46_28065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036086.1Sequence record reported by the local genomic context database.
Genomic interval118 457-119 152 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 016-119 152 ntGCF_018741505::NZ_CP036086.1::G00078
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018741505::NZ_CP036086.1::G00078Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036086.1All displayed genes belong to this local TCS context.
Neighborhood span117 016-119 152 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 016 nt119 152 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW46_RS27400GCF_018741505#EXW46_RS27400
HKClassic
117 016-118 467 nt · Reverse (-)
EXW46_RS27405GCF_018741505#EXW46_RS27405
RROmpRCurrent focus
118 457-119 152 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619505#B4117_RS08555Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1163804
Simplified PFAM architecture for RROC_1163804
PFAM domain coverage: 183 / 231 aa (79.2%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[151-223]
- Domain count: 2
- Matched identifier: RROC_1163804
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 151-223 ; Trans_reg_C 151-223
Cluster members and taxonomy
Representative gene: GCF_001619505#B4117_RS08555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018741505
AssemblyASM1874150v1 · Complete Genomehaploid
Genome composition5 490 614 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 75 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key