1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:6e-28:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW39_RS04820
Response regulator OmpR family
Bacillus mycoides · GCF_018741165
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018741165#EXW39_RS04820Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:147:6.81e-24:222:77:77- Raw architecture: Response_reg:4:6e-28:112:110:111#Trans_reg_C:147:6.81e-24:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018741165::NZ_CP036064.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span971559-973249Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW39_04890RefSeq proteinWP_215590832.1
Context group ID
GCF_018741165::NZ_CP036064.1::G00012Context members
EXW39_RS04820EXW39_RS04825
Partner locus tags
EXW39_RS04820EXW39_RS04825
Partner old locus tags
EXW39_04890EXW39_04895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215590832.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW39_RS04820Primary locus identifier stored in the genes table.
Old locus tagEXW39_04890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036064.1Sequence record reported by the local genomic context database.
Genomic interval971 559-972 230 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span971 559-973 249 ntGCF_018741165::NZ_CP036064.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018741165::NZ_CP036064.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036064.1All displayed genes belong to this local TCS context.
Neighborhood span971 559-973 249 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
971 559 nt973 249 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW39_RS04820GCF_018741165#EXW39_RS04820
RROmpRCurrent focus
971 559-972 230 nt · Forward (+)
EXW39_RS04825GCF_018741165#EXW39_RS04825
HKClassic
972 227-973 249 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741165#EXW39_RS04820The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1611066
Simplified PFAM architecture for RROC_1611066
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1611066
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_018741165#EXW39_RS04820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018741165
AssemblyASM1874116v1 · Complete Genomehaploid
Genome composition5 865 739 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 124 · HK 67 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key