1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:5.39e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW28_RS22840
Response regulator OmpR family
Bacillus mycoides · GCF_018741085
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018741085#EXW28_RS22840Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:2.19e-32:227:77:77- Raw architecture: Response_reg:4:5.39e-36:113:111:111#Trans_reg_C:151:2.19e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018741085::NZ_CP036046.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4460780-4462925Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW28_23365RefSeq proteinWP_215551583.1
Context group ID
GCF_018741085::NZ_CP036046.1::G00054Context members
EXW28_RS22840EXW28_RS22845
Partner locus tags
EXW28_RS22840EXW28_RS22845
Partner old locus tags
EXW28_23365EXW28_23370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215551583.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW28_RS22840Primary locus identifier stored in the genes table.
Old locus tagEXW28_23365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036046.1Sequence record reported by the local genomic context database.
Genomic interval4 460 780-4 461 469 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 460 780-4 462 925 ntGCF_018741085::NZ_CP036046.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018741085::NZ_CP036046.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036046.1All displayed genes belong to this local TCS context.
Neighborhood span4 460 780-4 462 925 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 460 780 nt4 462 925 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW28_RS22840GCF_018741085#EXW28_RS22840
RROmpRCurrent focus
4 460 780-4 461 469 nt · Reverse (-)
EXW28_RS22845GCF_018741085#EXW28_RS22845
HKClassic
4 461 471-4 462 925 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018739305#EXW37_RS22840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1273407
Simplified PFAM architecture for RROC_1273407
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1273407
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_018739305#EXW37_RS22840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018741085
AssemblyASM1874108v1 · Complete Genomehaploid
Genome composition5 753 119 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 70 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key