1 Response_reg#1
7-116 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:7:1.1e-38:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW50_RS07415
Response regulator OmpR family
Bacillus mycoides · GCF_018740945
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018740945#EXW50_RS07415Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 238 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 32.8% of protein
Raw token
Trans_reg_C:156:1.47e-34:233:78:77- Raw architecture: Response_reg:7:1.1e-38:116:111:111#Trans_reg_C:156:1.47e-34:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018740945::NZ_CP036040.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1464895-1467386Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW50_07580RefSeq proteinWP_002064500.1
Context group ID
GCF_018740945::NZ_CP036040.1::G00019Context members
EXW50_RS07415EXW50_RS07420
Partner locus tags
EXW50_RS07415EXW50_RS07420
Partner old locus tags
EXW50_07580EXW50_07585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002064500.1Primary protein accession used for annex mappings.
UniProt accessionJ9CBT0Primary UniProt accession resolved in the annex database.
UniProt IDJ9CBT0_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW50_RS07415Primary locus identifier stored in the genes table.
Old locus tagEXW50_07580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036040.1Sequence record reported by the local genomic context database.
Genomic interval1 464 895-1 465 611 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 464 895-1 467 386 ntGCF_018740945::NZ_CP036040.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018740945::NZ_CP036040.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036040.1All displayed genes belong to this local TCS context.
Neighborhood span1 464 895-1 467 386 nt2 492 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 464 895 nt1 467 386 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW50_RS07415GCF_018740945#EXW50_RS07415
RROmpRCurrent focus
1 464 895-1 465 611 nt · Forward (+)
EXW50_RS07420GCF_018740945#EXW50_RS07420
HKClassic
1 465 611-1 467 386 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS06785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932593
Simplified PFAM architecture for RROC_0932593
PFAM domain coverage: 187 / 238 aa (78.6%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_0932593
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; Trans_reg_C 156-233 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS06785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018740945
AssemblyASM1874094v1 · Complete Genomehaploid
Genome composition5 762 966 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key