1 HAMP#1
171-241 aa · 71 aa · 15.1% of protein
Raw token
HAMP:171:0.00000000016:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW53_RS12890
Histidine kinase, Classic
Bacillus mycoides · GCF_018739705
ClassHKTypeClassicLength471 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739705#EXW53_RS12890Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length471 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 471 aa (52.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa471 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-311 aa · 67 aa · 14.2% of protein
Raw token
HisKA:245:2e-16:311:67:643 HATPase_c#3
362-470 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:362:1.11e-26:470:109:109- Raw architecture: HAMP:171:0.00000000016:241:71:69#HisKA:245:2e-16:311:67:64#HATPase_c:362:1.11e-26:470:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739705::NZ_CP071808.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2519509-2521595Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW53_12920RefSeq proteinWP_215558567.1
Context group ID
GCF_018739705::NZ_CP071808.1::G00030Context members
EXW53_RS12890EXW53_RS12895
Partner locus tags
EXW53_RS12890EXW53_RS12895
Partner old locus tags
EXW53_12920EXW53_12925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215558567.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW53_RS12890Primary locus identifier stored in the genes table.
Old locus tagEXW53_12920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071808.1Sequence record reported by the local genomic context database.
Genomic interval2 519 509-2 520 924 nt1 416 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 519 509-2 521 595 ntGCF_018739705::NZ_CP071808.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739705::NZ_CP071808.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071808.1All displayed genes belong to this local TCS context.
Neighborhood span2 519 509-2 521 595 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 519 509 nt2 521 595 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW53_RS12890GCF_018739705#EXW53_RS12890
HKClassicCurrent focus
2 519 509-2 520 924 nt · Reverse (-)
EXW53_RS12895GCF_018739705#EXW53_RS12895
RROmpR
2 520 921-2 521 595 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018739705#EXW53_RS12890The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1711771
Simplified PFAM architecture for HKOC_1711771
PFAM domain coverage: 351 / 471 aa (74.5%)
1 aa471 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-311] | HATPase_c[362-469]
- Domain count: 4
- Matched identifier: HKOC_1711771
- Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-311 ; HATPase_c 362-469
Cluster members and taxonomy
Representative gene: GCF_018739705#EXW53_RS12890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739705
AssemblyASM1873970v1 · Complete Genomehaploid
Genome composition5 342 665 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 114 · HK 63 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key