1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000207:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW53_RS12560
Histidine kinase, Classic
Bacillus mycoides · GCF_018739705
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739705#EXW53_RS12560Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 490 aa (51.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.000000000000323:323:66:643 HATPase_c#3
369-482 aa · 114 aa · 23.3% of protein
Raw token
HATPase_c:369:1.28e-16:482:115:109- Raw architecture: HAMP:164:0.00000000000000207:233:70:69#HisKA:258:0.000000000000323:323:66:64#HATPase_c:369:1.28e-16:482:115:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739705::NZ_CP071808.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2460684-2462814Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW53_12590RefSeq proteinWP_215558610.1
Context group ID
GCF_018739705::NZ_CP071808.1::G00029Context members
EXW53_RS12560EXW53_RS12565
Partner locus tags
EXW53_RS12560EXW53_RS12565
Partner old locus tags
EXW53_12590EXW53_12595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215558610.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW53_RS12560Primary locus identifier stored in the genes table.
Old locus tagEXW53_12590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071808.1Sequence record reported by the local genomic context database.
Genomic interval2 460 684-2 462 156 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 460 684-2 462 814 ntGCF_018739705::NZ_CP071808.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739705::NZ_CP071808.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071808.1All displayed genes belong to this local TCS context.
Neighborhood span2 460 684-2 462 814 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 460 684 nt2 462 814 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW53_RS12560GCF_018739705#EXW53_RS12560
HKClassicCurrent focus
2 460 684-2 462 156 nt · Reverse (-)
EXW53_RS12565GCF_018739705#EXW53_RS12565
RROmpR
2 462 149-2 462 814 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018739705#EXW53_RS12560The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1537071
Simplified PFAM architecture for HKOC_1537071
PFAM domain coverage: 227 / 490 aa (46.3%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-232] | HisKA[259-323] | HATPase_c[370-479]
- Domain count: 3
- Matched identifier: HKOC_1537071
- Positioned domains: HAMP 181-232 ; HisKA 259-323 ; HATPase_c 370-479
Cluster members and taxonomy
Representative gene: GCF_018739705#EXW53_RS12560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739705
AssemblyASM1873970v1 · Complete Genomehaploid
Genome composition5 342 665 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 114 · HK 63 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key