1 HAMP#1
319-386 aa · 68 aa · 10.9% of protein
Raw token
HAMP:319:0.0000000000000391:386:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW52_RS23775
Histidine kinase, Classic
Bacillus mycoides · GCF_018739625
ClassHKTypeClassicLength625 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739625#EXW52_RS23775Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length625 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 625 aa (39.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa625 aa
Domain-by-domain annotation3 items
2 HisKA#2
406-470 aa · 65 aa · 10.4% of protein
Raw token
HisKA:406:0.0000000000000698:470:65:643 HATPase_c#3
514-624 aa · 111 aa · 17.8% of protein
Raw token
HATPase_c:514:1.82e-22:624:112:109- Raw architecture: HAMP:319:0.0000000000000391:386:68:69#HisKA:406:0.0000000000000698:470:65:64#HATPase_c:514:1.82e-22:624:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739625::NZ_CP036017.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4633709-4636272Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW52_24275RefSeq proteinWP_002184777.1
Context group ID
GCF_018739625::NZ_CP036017.1::G00057Context members
EXW52_RS23775EXW52_RS23780
Partner locus tags
EXW52_RS23775EXW52_RS23780
Partner old locus tags
EXW52_24275EXW52_24280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002184777.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW52_RS23775Primary locus identifier stored in the genes table.
Old locus tagEXW52_24275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036017.1Sequence record reported by the local genomic context database.
Genomic interval4 633 709-4 635 586 nt1 878 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 633 709-4 636 272 ntGCF_018739625::NZ_CP036017.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739625::NZ_CP036017.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036017.1All displayed genes belong to this local TCS context.
Neighborhood span4 633 709-4 636 272 nt2 564 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 633 709 nt4 636 272 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW52_RS23775GCF_018739625#EXW52_RS23775
HKClassicCurrent focus
4 633 709-4 635 586 nt · Reverse (-)
EXW52_RS23780GCF_018739625#EXW52_RS23780
RROmpR
4 635 583-4 636 272 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS03700Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0959415
Simplified PFAM architecture for HKOC_0959415
PFAM domain coverage: 226 / 625 aa (36.2%)
1 aa625 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[337-386] | HisKA[406-470] | HATPase_c[514-624]
- Domain count: 3
- Matched identifier: HKOC_0959415
- Positioned domains: HAMP 337-386 ; HisKA 406-470 ; HATPase_c 514-624
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS03700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739625
AssemblyASM1873962v1 · Complete Genomehaploid
Genome composition5 779 348 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key