1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.0000000000021:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW52_RS09195
Histidine kinase, Classic
Bacillus mycoides · GCF_018739625
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739625#EXW52_RS09195Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 355 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.5% of protein
Raw token
HisKA:130:0.0000000000143:191:62:643 HATPase_c#3
242-350 aa · 109 aa · 30.7% of protein
Raw token
HATPase_c:242:2.09e-21:350:110:109- Raw architecture: HAMP:50:0.0000000000021:119:70:69#HisKA:130:0.0000000000143:191:62:64#HATPase_c:242:2.09e-21:350:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739625::NZ_CP036017.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1792468-1794223Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW52_09345RefSeq proteinWP_149190366.1
Context group ID
GCF_018739625::NZ_CP036017.1::G00027Context members
EXW52_RS09190EXW52_RS09195
Partner locus tags
EXW52_RS09190EXW52_RS09195
Partner old locus tags
EXW52_09340EXW52_09345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_149190366.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW52_RS09195Primary locus identifier stored in the genes table.
Old locus tagEXW52_09345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036017.1Sequence record reported by the local genomic context database.
Genomic interval1 793 156-1 794 223 nt1 068 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 792 468-1 794 223 ntGCF_018739625::NZ_CP036017.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739625::NZ_CP036017.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036017.1All displayed genes belong to this local TCS context.
Neighborhood span1 792 468-1 794 223 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 792 468 nt1 794 223 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW52_RS09190GCF_018739625#EXW52_RS09190
RROmpR
1 792 468-1 793 166 nt · Forward (+)
EXW52_RS09195GCF_018739625#EXW52_RS09195
HKClassicCurrent focus
1 793 156-1 794 223 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008274925#DN409_RS09330Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2776430
Simplified PFAM architecture for HKOC_2776430
PFAM domain coverage: 221 / 355 aa (62.3%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-192] | HATPase_c[247-351]
- Domain count: 3
- Matched identifier: HKOC_2776430
- Positioned domains: HAMP 67-119 ; HisKA 130-192 ; HATPase_c 247-351
Cluster members and taxonomy
Representative gene: GCF_008274925#DN409_RS09330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739625
AssemblyASM1873962v1 · Complete Genomehaploid
Genome composition5 779 348 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key