1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:8.88e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW40_RS23355
Response regulator OmpR family
Bacillus mycoides · GCF_018739545
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739545#EXW40_RS23355Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 229 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 31.0% of protein
Raw token
Trans_reg_C:155:7.15e-29:225:74:77- Raw architecture: Response_reg:5:8.88e-35:114:111:111#Trans_reg_C:155:7.15e-29:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739545::NZ_CP036009.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4558659-4561198Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW40_23800RefSeq proteinWP_215586977.1
Context group ID
GCF_018739545::NZ_CP036009.1::G00059Context members
EXW40_RS23350EXW40_RS23355
Partner locus tags
EXW40_RS23350EXW40_RS23355
Partner old locus tags
EXW40_23795EXW40_23800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215586977.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW40_RS23355Primary locus identifier stored in the genes table.
Old locus tagEXW40_23800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036009.1Sequence record reported by the local genomic context database.
Genomic interval4 560 509-4 561 198 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 558 659-4 561 198 ntGCF_018739545::NZ_CP036009.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739545::NZ_CP036009.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036009.1All displayed genes belong to this local TCS context.
Neighborhood span4 558 659-4 561 198 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 558 659 nt4 561 198 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW40_RS23350GCF_018739545#EXW40_RS23350
HKClassic
4 558 659-4 560 512 nt · Reverse (-)
EXW40_RS23355GCF_018739545#EXW40_RS23355
RROmpRCurrent focus
4 560 509-4 561 198 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018739385#EXW60_RS07215Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1273408
Simplified PFAM architecture for RROC_1273408
PFAM domain coverage: 181 / 229 aa (79.0%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1273408
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_018739385#EXW60_RS07215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739545
AssemblyASM1873954v1 · Complete Genomehaploid
Genome composition5 741 417 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key