1 GAF#1
263-386 aa · 124 aa · 20.3% of protein
Raw token
GAF:263:0.00000911:386:132:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW40_RS03260
Histidine kinase, Classic
Bacillus mycoides · GCF_018739545
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739545#EXW40_RS03260Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage276 / 610 aa (45.2%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
403-467 aa · 65 aa · 10.7% of protein
Raw token
HisKA_3:403:1.08e-17:467:65:683 HATPase_c#3
517-603 aa · 87 aa · 14.3% of protein
Raw token
HATPase_c:517:0.0000000000000163:603:97:109- Raw architecture: GAF:263:0.00000911:386:132:133#HisKA_3:403:1.08e-17:467:65:68#HATPase_c:517:0.0000000000000163:603:97:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739545::NZ_CP036009.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span650924-653399Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW40_03305RefSeq proteinWP_215587256.1
Context group ID
GCF_018739545::NZ_CP036009.1::G00009Context members
EXW40_RS03260EXW40_RS03265
Partner locus tags
EXW40_RS03260EXW40_RS03265
Partner old locus tags
EXW40_03305EXW40_03310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215587256.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW40_RS03260Primary locus identifier stored in the genes table.
Old locus tagEXW40_03305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036009.1Sequence record reported by the local genomic context database.
Genomic interval650 924-652 756 nt1 833 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span650 924-653 399 ntGCF_018739545::NZ_CP036009.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739545::NZ_CP036009.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036009.1All displayed genes belong to this local TCS context.
Neighborhood span650 924-653 399 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
650 924 nt653 399 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW40_RS03260GCF_018739545#EXW40_RS03260
HKClassicCurrent focus
650 924-652 756 nt · Forward (+)
EXW40_RS03265GCF_018739545#EXW40_RS03265
RRNarL
652 758-653 399 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018739385#EXW60_RS13740Use this link to inspect the representative gene detail.
PFAM architectureGAF + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1006557
Simplified PFAM architecture for HKOC_1006557
PFAM domain coverage: 274 / 610 aa (44.9%)
1 aa610 aa
GAFHisKA_3HATPase_c
- Simplified architecture: GAF + HisKA_3 + HATPase_c
- Raw architecture: GAF[268-384] | HisKA_3[403-467] | HATPase_c[513-604]
- Domain count: 3
- Matched identifier: HKOC_1006557
- Positioned domains: GAF 268-384 ; HisKA_3 403-467 ; HATPase_c 513-604
Cluster members and taxonomy
Representative gene: GCF_018739385#EXW60_RS13740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739545
AssemblyASM1873954v1 · Complete Genomehaploid
Genome composition5 741 417 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key