1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:7.98e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW61_RS10995
Response regulator OmpR family
Bacillus mycoides · GCF_018739525
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739525#EXW61_RS10995Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:153:7.2e-34:228:76:77- Raw architecture: Response_reg:5:7.98e-41:114:111:111#Trans_reg_C:153:7.2e-34:228:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739525::NZ_CP036004.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2085452-2087210Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW61_11190RefSeq proteinWP_215599507.1
Context group ID
GCF_018739525::NZ_CP036004.1::G00023Context members
EXW61_RS10990EXW61_RS10995
Partner locus tags
EXW61_RS10990EXW61_RS10995
Partner old locus tags
EXW61_11185EXW61_11190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215599507.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW61_RS10995Primary locus identifier stored in the genes table.
Old locus tagEXW61_11190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036004.1Sequence record reported by the local genomic context database.
Genomic interval2 086 524-2 087 210 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 085 452-2 087 210 ntGCF_018739525::NZ_CP036004.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739525::NZ_CP036004.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036004.1All displayed genes belong to this local TCS context.
Neighborhood span2 085 452-2 087 210 nt1 759 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 085 452 nt2 087 210 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW61_RS10990GCF_018739525#EXW61_RS10990
HKClassic
2 085 452-2 086 384 nt · Reverse (-)
EXW61_RS10995GCF_018739525#EXW61_RS10995
RROmpRCurrent focus
2 086 524-2 087 210 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018739525#EXW61_RS10995The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1326487
Simplified PFAM architecture for RROC_1326487
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1326487
- Positioned domains: Response_reg 5-114 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_018739525#EXW61_RS10995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739525
AssemblyASM1873952v1 · Complete Genomehaploid
Genome composition5 956 071 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key