1 HAMP#1
8-77 aa · 70 aa · 22.6% of protein
Raw token
HAMP:8:0.00000000477:77:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW61_RS10990
Histidine kinase, Classic
Bacillus mycoides · GCF_018739525
ClassHKTypeClassicLength310 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739525#EXW61_RS10990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length310 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 310 aa (75.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa310 aa
Domain-by-domain annotation3 items
2 HisKA#2
89-152 aa · 64 aa · 20.6% of protein
Raw token
HisKA:89:0.00000000000000116:152:64:643 HATPase_c#3
201-299 aa · 99 aa · 31.9% of protein
Raw token
HATPase_c:201:1.75e-16:299:99:109- Raw architecture: HAMP:8:0.00000000477:77:70:69#HisKA:89:0.00000000000000116:152:64:64#HATPase_c:201:1.75e-16:299:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739525::NZ_CP036004.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2085452-2087210Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW61_11185RefSeq proteinWP_407707984.1
Context group ID
GCF_018739525::NZ_CP036004.1::G00023Context members
EXW61_RS10990EXW61_RS10995
Partner locus tags
EXW61_RS10990EXW61_RS10995
Partner old locus tags
EXW61_11185EXW61_11190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_407707984.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW61_RS10990Primary locus identifier stored in the genes table.
Old locus tagEXW61_11185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036004.1Sequence record reported by the local genomic context database.
Genomic interval2 085 452-2 086 384 nt933 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 085 452-2 087 210 ntGCF_018739525::NZ_CP036004.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739525::NZ_CP036004.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036004.1All displayed genes belong to this local TCS context.
Neighborhood span2 085 452-2 087 210 nt1 759 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 085 452 nt2 087 210 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW61_RS10990GCF_018739525#EXW61_RS10990
HKClassicCurrent focus
2 085 452-2 086 384 nt · Reverse (-)
EXW61_RS10995GCF_018739525#EXW61_RS10995
RROmpR
2 086 524-2 087 210 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018739525#EXW61_RS10990The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2878941
Simplified PFAM architecture for HKOC_2878941
PFAM domain coverage: 205 / 310 aa (66.1%)
1 aa310 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[34-76] | HisKA[89-152] | HATPase_c[202-299]
- Domain count: 3
- Matched identifier: HKOC_2878941
- Positioned domains: HAMP 34-76 ; HisKA 89-152 ; HATPase_c 202-299
Cluster members and taxonomy
Representative gene: GCF_018739525#EXW61_RS10990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739525
AssemblyASM1873952v1 · Complete Genomehaploid
Genome composition5 956 071 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key