1 HAMP#1
165-234 aa · 70 aa · 15.3% of protein
Raw token
HAMP:165:1.99e-16:234:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW61_RS10540
Histidine kinase, Classic
Bacillus mycoides · GCF_018739525
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739525#EXW61_RS10540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 458 aa (53.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.6% of protein
Raw token
HisKA:238:1.34e-16:304:67:643 HATPase_c#3
348-457 aa · 110 aa · 24.0% of protein
Raw token
HATPase_c:348:6.19e-35:457:110:109- Raw architecture: HAMP:165:1.99e-16:234:70:69#HisKA:238:1.34e-16:304:67:64#HATPase_c:348:6.19e-35:457:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739525::NZ_CP036004.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1991573-1993628Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW61_10720RefSeq proteinWP_098169107.1
Context group ID
GCF_018739525::NZ_CP036004.1::G00021Context members
EXW61_RS10535EXW61_RS10540
Partner locus tags
EXW61_RS10535EXW61_RS10540
Partner old locus tags
EXW61_10715EXW61_10720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098169107.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW61_RS10540Primary locus identifier stored in the genes table.
Old locus tagEXW61_10720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036004.1Sequence record reported by the local genomic context database.
Genomic interval1 992 252-1 993 628 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 991 573-1 993 628 ntGCF_018739525::NZ_CP036004.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739525::NZ_CP036004.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036004.1All displayed genes belong to this local TCS context.
Neighborhood span1 991 573-1 993 628 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 991 573 nt1 993 628 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW61_RS10535GCF_018739525#EXW61_RS10535
RROmpR
1 991 573-1 992 250 nt · Forward (+)
EXW61_RS10540GCF_018739525#EXW61_RS10540
HKClassicCurrent focus
1 992 252-1 993 628 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002554935#CN600_RS30095Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1861569
Simplified PFAM architecture for HKOC_1861569
PFAM domain coverage: 226 / 458 aa (49.3%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-233] | HisKA[238-303] | HATPase_c[348-457]
- Domain count: 3
- Matched identifier: HKOC_1861569
- Positioned domains: HAMP 184-233 ; HisKA 238-303 ; HATPase_c 348-457
Cluster members and taxonomy
Representative gene: GCF_002554935#CN600_RS30095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739525
AssemblyASM1873952v1 · Complete Genomehaploid
Genome composition5 956 071 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key