1 Response_reg#1
4-113 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:4:3.16e-30:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW27_RS17175
Response regulator OmpR family
Bacillus mycoides · GCF_018739505
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739505#EXW27_RS17175Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 221 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-219 aa · 72 aa · 32.6% of protein
Raw token
Trans_reg_C:148:2.17e-31:219:77:77- Raw architecture: Response_reg:4:3.16e-30:113:111:111#Trans_reg_C:148:2.17e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739505::NZ_CP035999.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3385110-3387192Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW27_17495RefSeq proteinWP_000148832.1
Context group ID
GCF_018739505::NZ_CP035999.1::G00052Context members
EXW27_RS17170EXW27_RS17175
Partner locus tags
EXW27_RS17170EXW27_RS17175
Partner old locus tags
EXW27_17490EXW27_17495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000148832.1Primary protein accession used for annex mappings.
UniProt accessionR8HL03Primary UniProt accession resolved in the annex database.
UniProt IDR8HL03_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW27_RS17175Primary locus identifier stored in the genes table.
Old locus tagEXW27_17495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP035999.1Sequence record reported by the local genomic context database.
Genomic interval3 386 527-3 387 192 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 385 110-3 387 192 ntGCF_018739505::NZ_CP035999.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739505::NZ_CP035999.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP035999.1All displayed genes belong to this local TCS context.
Neighborhood span3 385 110-3 387 192 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 385 110 nt3 387 192 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW27_RS17170GCF_018739505#EXW27_RS17170
HKClassic
3 385 110-3 386 549 nt · Reverse (-)
EXW27_RS17175GCF_018739505#EXW27_RS17175
RROmpRCurrent focus
3 386 527-3 387 192 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS22730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1677546
Simplified PFAM architecture for RROC_1677546
PFAM domain coverage: 180 / 221 aa (81.4%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-218]
- Domain count: 2
- Matched identifier: RROC_1677546
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-218 ; Trans_reg_C 148-218
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS22730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739505
AssemblyASM1873950v1 · Complete Genomehaploid
Genome composition6 029 494 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 73 · RR 65CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key