1 Response_reg#1
5-113 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:5:1.86e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW32_RS16090
Response regulator OmpR family
Bacillus mycoides · GCF_018739445
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739445#EXW32_RS16090Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.6% of protein
Raw token
Trans_reg_C:148:6.25e-28:223:77:77- Raw architecture: Response_reg:5:1.86e-34:113:111:111#Trans_reg_C:148:6.25e-28:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739445::NZ_CP035994.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3189127-3191261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW32_16485RefSeq proteinWP_001014563.1
Context group ID
GCF_018739445::NZ_CP035994.1::G00053Context members
EXW32_RS16085EXW32_RS16090
Partner locus tags
EXW32_RS16085EXW32_RS16090
Partner old locus tags
EXW32_16480EXW32_16485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001014563.1Primary protein accession used for annex mappings.
UniProt accessionJ8EH98Primary UniProt accession resolved in the annex database.
UniProt IDJ8EH98_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW32_RS16090Primary locus identifier stored in the genes table.
Old locus tagEXW32_16485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP035994.1Sequence record reported by the local genomic context database.
Genomic interval3 190 581-3 191 261 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 189 127-3 191 261 ntGCF_018739445::NZ_CP035994.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739445::NZ_CP035994.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP035994.1All displayed genes belong to this local TCS context.
Neighborhood span3 189 127-3 191 261 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 189 127 nt3 191 261 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW32_RS16085GCF_018739445#EXW32_RS16085
HKClassic
3 189 127-3 190 581 nt · Reverse (-)
EXW32_RS16090GCF_018739445#EXW32_RS16090
RROmpRCurrent focus
3 190 581-3 191 261 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407942
Simplified PFAM architecture for RROC_1407942
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407942
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739445
AssemblyASM1873944v1 · Complete Genomehaploid
Genome composition5 900 818 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 70 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key