1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:2.16e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW26_RS12270
Response regulator OmpR family
Bacillus mycoides · GCF_018739365
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739365#EXW26_RS12270Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:155:2.63e-24:225:72:77- Raw architecture: Response_reg:4:2.16e-25:113:111:111#Trans_reg_C:155:2.63e-24:225:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739365::NZ_CP035984.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2418331-2420024Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW26_12530RefSeq proteinWP_002085493.1
Context group ID
GCF_018739365::NZ_CP035984.1::G00032Context members
EXW26_RS12270EXW26_RS12275
Partner locus tags
EXW26_RS12270EXW26_RS12275
Partner old locus tags
EXW26_12530EXW26_12535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002085493.1Primary protein accession used for annex mappings.
UniProt accessionA9VFZ6Primary UniProt accession resolved in the annex database.
UniProt IDA9VFZ6_BACMKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW26_RS12270Primary locus identifier stored in the genes table.
Old locus tagEXW26_12530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP035984.1Sequence record reported by the local genomic context database.
Genomic interval2 418 331-2 419 035 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 418 331-2 420 024 ntGCF_018739365::NZ_CP035984.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739365::NZ_CP035984.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP035984.1All displayed genes belong to this local TCS context.
Neighborhood span2 418 331-2 420 024 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 418 331 nt2 420 024 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW26_RS12270GCF_018739365#EXW26_RS12270
RROmpRCurrent focus
2 418 331-2 419 035 nt · Forward (+)
EXW26_RS12275GCF_018739365#EXW26_RS12275
HKClassic
2 419 038-2 420 024 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS10900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047054
Simplified PFAM architecture for RROC_1047054
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1047054
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS10900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739365
AssemblyASM1873936v1 · Complete Genomehaploid
Genome composition5 809 871 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key