1 Response_reg#1
14-108 aa · 95 aa · 39.9% of protein
Raw token
Response_reg:14:0.00000000000383:108:97:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW30_RS25930
Response regulator LytTR family
Bacillus mycoides · GCF_018736725
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018736725#EXW30_RS25930Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 238 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-237 aa · 102 aa · 42.9% of protein
Raw token
LytTR:136:3.13e-30:237:102:98- Raw architecture: Response_reg:14:0.00000000000383:108:97:111#LytTR:136:3.13e-30:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018736725::NZ_CP035962.1::G00061
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5061336-5062052Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW30_26430RefSeq proteinWP_002113162.1
Context group ID
GCF_018736725::NZ_CP035962.1::G00061Context members
EXW30_RS25930
Partner locus tags
EXW30_RS25930
Partner old locus tags
EXW30_26430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002113162.1Primary protein accession used for annex mappings.
UniProt accessionA0A1D3MWF5Primary UniProt accession resolved in the annex database.
UniProt IDA0A1D3MWF5_BACMYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW30_RS25930Primary locus identifier stored in the genes table.
Old locus tagEXW30_26430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP035962.1Sequence record reported by the local genomic context database.
Genomic interval5 061 336-5 062 052 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 061 336-5 062 052 ntGCF_018736725::NZ_CP035962.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018736725::NZ_CP035962.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP035962.1All displayed genes belong to this local TCS context.
Neighborhood span5 061 336-5 062 052 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 061 336 nt5 062 052 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EXW30_RS25930GCF_018736725#EXW30_RS25930
RRLytTRCurrent focus
5 061 336-5 062 052 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291295#IEE_RS00420Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0933306
Simplified PFAM architecture for RROC_0933306
PFAM domain coverage: 204 / 238 aa (85.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[138-236]
- Domain count: 2
- Matched identifier: RROC_0933306
- Positioned domains: Response_reg 5-109 ; Response_reg 5-109 ; LytTR 138-236 ; LytTR 138-236
Cluster members and taxonomy
Representative gene: GCF_000291295#IEE_RS00420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018736725
AssemblyASM1873672v1 · Complete Genomehaploid
Genome composition5 740 114 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key