1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:6.7e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW30_RS23120
Response regulator OmpR family
Bacillus mycoides · GCF_018736725
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018736725#EXW30_RS23120Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 229 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-225 aa · 74 aa · 32.3% of protein
Raw token
Trans_reg_C:152:4.55e-30:225:77:77- Raw architecture: Response_reg:5:6.7e-37:114:111:111#Trans_reg_C:152:4.55e-30:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018736725::NZ_CP035962.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4511894-4514454Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW30_23560RefSeq proteinWP_016106465.1
Context group ID
GCF_018736725::NZ_CP035962.1::G00051Context members
EXW30_RS23115EXW30_RS23120
Partner locus tags
EXW30_RS23115EXW30_RS23120
Partner old locus tags
EXW30_23555EXW30_23560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016106465.1Primary protein accession used for annex mappings.
UniProt accessionR8PZ48Primary UniProt accession resolved in the annex database.
UniProt IDR8PZ48_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW30_RS23120Primary locus identifier stored in the genes table.
Old locus tagEXW30_23560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP035962.1Sequence record reported by the local genomic context database.
Genomic interval4 513 765-4 514 454 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 511 894-4 514 454 ntGCF_018736725::NZ_CP035962.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018736725::NZ_CP035962.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP035962.1All displayed genes belong to this local TCS context.
Neighborhood span4 511 894-4 514 454 nt2 561 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 511 894 nt4 514 454 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW30_RS23115GCF_018736725#EXW30_RS23115
HKClassic
4 511 894-4 513 768 nt · Reverse (-)
EXW30_RS23120GCF_018736725#EXW30_RS23120
RROmpRCurrent focus
4 513 765-4 514 454 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399525#IIQ_RS25170Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1249248
Simplified PFAM architecture for RROC_1249248
PFAM domain coverage: 183 / 229 aa (79.9%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_1249248
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-225 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_000399525#IIQ_RS25170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018736725
AssemblyASM1873672v1 · Complete Genomehaploid
Genome composition5 740 114 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key