1 PocR#1
7-75 aa · 69 aa · 11.6% of protein
Raw token
PocR:7:0.000000974:75:104:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW30_RS16310
Histidine kinase, Classic
Bacillus mycoides · GCF_018736725
ClassHKTypeClassicLength596 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_018736725#EXW30_RS16310Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PocRPASPAS_4HisKAHATPase_c
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage439 / 596 aa (73.7%)Merged over positioned domains only.
Domain description1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation5 items
2 PAS#2
131-234 aa · 104 aa · 17.4% of protein
Raw token
PAS:131:0.000000000518:234:109:1133 PAS_4#3
255-357 aa · 103 aa · 17.3% of protein
Raw token
PAS_4:255:0.000000000000218:357:108:1104 HisKA#4
372-431 aa · 60 aa · 10.1% of protein
Raw token
HisKA:372:0.000000000000349:431:60:645 HATPase_c#5
479-581 aa · 103 aa · 17.3% of protein
Raw token
HATPase_c:479:6.86e-24:581:107:109- Raw architecture: PocR:7:0.000000974:75:104:162#PAS:131:0.000000000518:234:109:113#PAS_4:255:0.000000000000218:357:108:110#HisKA:372:0.000000000000349:431:60:64#HATPase_c:479:6.86e-24:581:107:109
- Domain description: 1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_018736725::NZ_CP035962.1::G00040
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span3183419-3187494Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW30_16610RefSeq proteinWP_215569023.1
Context group ID
GCF_018736725::NZ_CP035962.1::G00040Context members
EXW30_RS16300EXW30_RS16305EXW30_RS16310
Partner locus tags
EXW30_RS16300EXW30_RS16305EXW30_RS16310
Partner old locus tags
EXW30_16600EXW30_16605EXW30_16610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215569023.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW30_RS16310Primary locus identifier stored in the genes table.
Old locus tagEXW30_16610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP035962.1Sequence record reported by the local genomic context database.
Genomic interval3 185 704-3 187 494 nt1 791 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 183 419-3 187 494 ntGCF_018736725::NZ_CP035962.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018736725::NZ_CP035962.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP035962.1All displayed genes belong to this local TCS context.
Neighborhood span3 183 419-3 187 494 nt4 076 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 183 419 nt3 187 494 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
EXW30_RS16300GCF_018736725#EXW30_RS16300
HKClassic
3 183 419-3 184 498 nt · Reverse (-)
EXW30_RS16305GCF_018736725#EXW30_RS16305
RROmpR
3 184 495-3 185 208 nt · Reverse (-)
EXW30_RS16310GCF_018736725#EXW30_RS16310
HKClassicCurrent focus
3 185 704-3 187 494 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018736725#EXW30_RS16310The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1076689
Simplified PFAM architecture for HKOC_1076689
PFAM domain coverage: 345 / 596 aa (57.9%)
1 aa596 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[131-209] | PAS_4[255-357] | HisKA[373-431] | HATPase_c[479-582]
- Domain count: 4
- Matched identifier: HKOC_1076689
- Positioned domains: PAS 131-209 ; PAS_4 255-357 ; HisKA 373-431 ; HATPase_c 479-582
Cluster members and taxonomy
Representative gene: GCF_018736725#EXW30_RS16310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018736725
AssemblyASM1873672v1 · Complete Genomehaploid
Genome composition5 740 114 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key