1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:4.17e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW30_RS16305
Response regulator OmpR family
Bacillus mycoides · GCF_018736725
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_018736725#EXW30_RS16305Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:155:4.62e-32:229:75:77- Raw architecture: Response_reg:5:4.17e-39:114:111:111#Trans_reg_C:155:4.62e-32:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_018736725::NZ_CP035962.1::G00040
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span3183419-3187494Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW30_16605RefSeq proteinWP_215569022.1
Context group ID
GCF_018736725::NZ_CP035962.1::G00040Context members
EXW30_RS16300EXW30_RS16305EXW30_RS16310
Partner locus tags
EXW30_RS16300EXW30_RS16305EXW30_RS16310
Partner old locus tags
EXW30_16600EXW30_16605EXW30_16610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215569022.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW30_RS16305Primary locus identifier stored in the genes table.
Old locus tagEXW30_16605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP035962.1Sequence record reported by the local genomic context database.
Genomic interval3 184 495-3 185 208 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 183 419-3 187 494 ntGCF_018736725::NZ_CP035962.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018736725::NZ_CP035962.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP035962.1All displayed genes belong to this local TCS context.
Neighborhood span3 183 419-3 187 494 nt4 076 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 183 419 nt3 187 494 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
EXW30_RS16300GCF_018736725#EXW30_RS16300
HKClassic
3 183 419-3 184 498 nt · Reverse (-)
EXW30_RS16305GCF_018736725#EXW30_RS16305
RROmpRCurrent focus
3 184 495-3 185 208 nt · Reverse (-)
EXW30_RS16310GCF_018736725#EXW30_RS16310
HKClassic
3 185 704-3 187 494 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018736725#EXW30_RS16305The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0974624
Simplified PFAM architecture for RROC_0974624
PFAM domain coverage: 184 / 237 aa (77.6%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_0974624
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_018736725#EXW30_RS16305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018736725
AssemblyASM1873672v1 · Complete Genomehaploid
Genome composition5 740 114 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key