1 HAMP#1
189-256 aa · 68 aa · 14.0% of protein
Raw token
HAMP:189:0.0000000000445:256:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW30_RS02875
Histidine kinase, Classic
Bacillus mycoides · GCF_018736725
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018736725#EXW30_RS02875Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 484 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-327 aa · 66 aa · 13.6% of protein
Raw token
HisKA:262:0.0000000000000939:327:66:643 HATPase_c#3
374-484 aa · 111 aa · 22.9% of protein
Raw token
HATPase_c:374:3.98e-33:484:111:109- Raw architecture: HAMP:189:0.0000000000445:256:70:69#HisKA:262:0.0000000000000939:327:66:64#HATPase_c:374:3.98e-33:484:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018736725::NZ_CP035962.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span559962-562153Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW30_02925RefSeq proteinWP_078180315.1
Context group ID
GCF_018736725::NZ_CP035962.1::G00007Context members
EXW30_RS02875EXW30_RS02880
Partner locus tags
EXW30_RS02875EXW30_RS02880
Partner old locus tags
EXW30_02925EXW30_02930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078180315.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9V163Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9V163_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW30_RS02875Primary locus identifier stored in the genes table.
Old locus tagEXW30_02925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP035962.1Sequence record reported by the local genomic context database.
Genomic interval559 962-561 416 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span559 962-562 153 ntGCF_018736725::NZ_CP035962.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018736725::NZ_CP035962.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP035962.1All displayed genes belong to this local TCS context.
Neighborhood span559 962-562 153 nt2 192 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
559 962 nt562 153 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW30_RS02875GCF_018736725#EXW30_RS02875
HKClassicCurrent focus
559 962-561 416 nt · Reverse (-)
EXW30_RS02880GCF_018736725#EXW30_RS02880
RROmpR
561 482-562 153 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014575#BW892_RS10000Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1585854
Simplified PFAM architecture for HKOC_1585854
PFAM domain coverage: 225 / 484 aa (46.5%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[207-256] | HisKA[263-327] | HATPase_c[374-483]
- Domain count: 3
- Matched identifier: HKOC_1585854
- Positioned domains: HAMP 207-256 ; HisKA 263-327 ; HATPase_c 374-483
Cluster members and taxonomy
Representative gene: GCF_002014575#BW892_RS10000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018736725
AssemblyASM1873672v1 · Complete Genomehaploid
Genome composition5 740 114 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key