1 Response_reg#1
4-123 aa · 120 aa · 49.0% of protein
Raw token
Response_reg:4:0.00000011:123:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KH076_RS05000
Response regulator LytTR family
Streptococcus sp. · GCF_018382235
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018382235#KH076_RS05000Stable P2CS identifier used across views.
GenomeGCF_018382235Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 245 aa (85.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-243 aa · 90 aa · 36.7% of protein
Raw token
LytTR:154:3.73e-21:243:95:98- Raw architecture: Response_reg:4:0.00000011:123:120:111#LytTR:154:3.73e-21:243:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018382235::NZ_JAGZQI010000012.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span36278-37015Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKH076_05000RefSeq proteinWP_002887713.1
Context group ID
GCF_018382235::NZ_JAGZQI010000012.1::G00005Context members
KH076_RS05000
Partner locus tags
KH076_RS05000
Partner old locus tags
KH076_05000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002887713.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKH076_RS05000Primary locus identifier stored in the genes table.
Old locus tagKH076_05000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGZQI010000012.1Sequence record reported by the local genomic context database.
Genomic interval36 278-37 015 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 278-37 015 ntGCF_018382235::NZ_JAGZQI010000012.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018382235::NZ_JAGZQI010000012.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGZQI010000012.1All displayed genes belong to this local TCS context.
Neighborhood span36 278-37 015 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 278 nt37 015 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KH076_RS05000GCF_018382235#KH076_RS05000
RRLytTRCurrent focus
36 278-37 015 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018382235#KH076_RS05000The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0797111
Simplified PFAM architecture for RROC_0797111
PFAM domain coverage: 210 / 245 aa (85.7%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-122] | LytTR[152-242]
- Domain count: 2
- Matched identifier: RROC_0797111
- Positioned domains: Response_reg 4-122 ; LytTR 152-242
Cluster members and taxonomy
Representative gene: GCF_018382235#KH076_RS05000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_018382235
AssemblyASM1838223v1 · Contighaploid
Genome composition2 083 171 bp · 39,5% GCStreptococcus sp.
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key