1 HAMP#1
156-225 aa · 70 aa · 15.3% of protein
Raw token
HAMP:156:0.000000469:225:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KH076_RS01535
Histidine kinase, Classic
Streptococcus sp. · GCF_018382235
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018382235#KH076_RS01535Stable P2CS identifier used across views.
GenomeGCF_018382235Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 458 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-297 aa · 61 aa · 13.3% of protein
Raw token
HisKA:237:0.00000000769:297:61:643 HATPase_c#3
349-458 aa · 110 aa · 24.0% of protein
Raw token
HATPase_c:349:6.53e-21:458:110:109- Raw architecture: HAMP:156:0.000000469:225:70:69#HisKA:237:0.00000000769:297:61:64#HATPase_c:349:6.53e-21:458:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018382235::NZ_JAGZQI010000002.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101034-103060Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKH076_01540RefSeq proteinWP_293919543.1
Context group ID
GCF_018382235::NZ_JAGZQI010000002.1::G00009Context members
KH076_RS01530KH076_RS01535
Partner locus tags
KH076_RS01530KH076_RS01535
Partner old locus tags
KH076_01535KH076_01540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_293919543.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKH076_RS01535Primary locus identifier stored in the genes table.
Old locus tagKH076_01540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGZQI010000002.1Sequence record reported by the local genomic context database.
Genomic interval101 684-103 060 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 034-103 060 ntGCF_018382235::NZ_JAGZQI010000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018382235::NZ_JAGZQI010000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGZQI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span101 034-103 060 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 034 nt103 060 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KH076_RS01530GCF_018382235#KH076_RS01530
RROmpR
101 034-101 693 nt · Forward (+)
KH076_RS01535GCF_018382235#KH076_RS01535
HKClassicCurrent focus
101 684-103 060 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018382235#KH076_RS01535The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1865684
Simplified PFAM architecture for HKOC_1865684
PFAM domain coverage: 171 / 458 aa (37.3%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-297] | HATPase_c[349-458]
- Domain count: 2
- Matched identifier: HKOC_1865684
- Positioned domains: HisKA 237-297 ; HATPase_c 349-458
Cluster members and taxonomy
Representative gene: GCF_018382235#KH076_RS01535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_018382235
AssemblyASM1838223v1 · Contighaploid
Genome composition2 083 171 bp · 39,5% GCStreptococcus sp.
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key