1 Response_reg#1
9-116 aa · 108 aa · 48.2% of protein
Raw token
Response_reg:9:3.8e-33:116:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1H50_RS00060
Response regulator OmpR family
Clostridioides difficile · GCF_018264005
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018264005#E1H50_RS00060Stable P2CS identifier used across views.
GenomeGCF_018264005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 224 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:149:4.37e-23:223:77:77- Raw architecture: Response_reg:9:3.8e-33:116:110:111#Trans_reg_C:149:4.37e-23:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018264005::NZ_SMNN01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12523-13197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE1H50_00060RefSeq proteinWP_211652167.1
Context group ID
GCF_018264005::NZ_SMNN01000001.1::G00001Context members
E1H50_RS00060
Partner locus tags
E1H50_RS00060
Partner old locus tags
E1H50_00060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_211652167.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1H50_RS00060Primary locus identifier stored in the genes table.
Old locus tagE1H50_00060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SMNN01000001.1Sequence record reported by the local genomic context database.
Genomic interval12 523-13 197 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 523-13 197 ntGCF_018264005::NZ_SMNN01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018264005::NZ_SMNN01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SMNN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span12 523-13 197 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 523 nt13 197 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E1H50_RS00060GCF_018264005#E1H50_RS00060
RROmpRCurrent focus
12 523-13 197 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018264005#E1H50_RS00060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1555838
Simplified PFAM architecture for RROC_1555838
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-116] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1555838
- Positioned domains: Response_reg 9-116 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_018264005#E1H50_RS00060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_018264005
AssemblyASM1826400v1 · Contighaploid
Genome composition4 265 397 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key