1 HisKA_3#1
201-265 aa · 65 aa · 15.9% of protein
Raw token
HisKA_3:201:0.0000000637:265:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I3K78_RS05875
Histidine kinase, Classic
Bifidobacterium longum · GCF_018141605
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018141605#I3K78_RS05875Stable P2CS identifier used across views.
GenomeGCF_018141605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 410 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000304:392:86:109- Raw architecture: HisKA_3:201:0.0000000637:265:65:68#HATPase_c:322:0.0000304:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018141605::NZ_CP065397.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1365314-1367306Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI3K78_05865RefSeq proteinWP_007056207.1
Context group ID
GCF_018141605::NZ_CP065397.1::G00007Context members
I3K78_RS05875I3K78_RS05880
Partner locus tags
I3K78_RS05875I3K78_RS05880
Partner old locus tags
I3K78_05865I3K78_05870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007056207.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4NJF8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4NJF8_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI3K78_RS05875Primary locus identifier stored in the genes table.
Old locus tagI3K78_05865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP065397.1Sequence record reported by the local genomic context database.
Genomic interval1 365 314-1 366 546 nt1 233 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 365 314-1 367 306 ntGCF_018141605::NZ_CP065397.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018141605::NZ_CP065397.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP065397.1All displayed genes belong to this local TCS context.
Neighborhood span1 365 314-1 367 306 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 365 314 nt1 367 306 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I3K78_RS05875GCF_018141605#I3K78_RS05875
HKClassicCurrent focus
1 365 314-1 366 546 nt · Forward (+)
I3K78_RS05880GCF_018141605#I3K78_RS05880
RRNarL
1 366 581-1 367 306 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007525#BL_RS01280Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2354149
Simplified PFAM architecture for HKOC_2354149
PFAM domain coverage: 69 / 410 aa (16.8%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-268]
- Domain count: 1
- Matched identifier: HKOC_2354149
- Positioned domains: HisKA_3 200-268
Cluster members and taxonomy
Representative gene: GCF_000007525#BL_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_018141605
AssemblyASM1814160v1 · Complete Genomehaploid
Genome composition2 561 296 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key