1 Response_reg#1
9-133 aa · 125 aa · 50.4% of protein
Raw token
Response_reg:9:1.29e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I3K78_RS03890
Response regulator NarL family
Bifidobacterium longum · GCF_018141605
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018141605#I3K78_RS03890Stable P2CS identifier used across views.
GenomeGCF_018141605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 248 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-242 aa · 58 aa · 23.4% of protein
Raw token
HTH_LUXR:185:4.34e-23:242:58:58- Raw architecture: Response_reg:9:1.29e-28:133:125:111#HTH_LUXR:185:4.34e-23:242:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018141605::NZ_CP065397.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span926414-929852Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI3K78_03885RefSeq proteinWP_212106091.1
Context group ID
GCF_018141605::NZ_CP065397.1::G00005Context members
I3K78_RS03890I3K78_RS03895
Partner locus tags
I3K78_RS03890I3K78_RS03895
Partner old locus tags
I3K78_03885I3K78_03890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_212106091.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI3K78_RS03890Primary locus identifier stored in the genes table.
Old locus tagI3K78_03885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP065397.1Sequence record reported by the local genomic context database.
Genomic interval926 414-927 160 nt747 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span926 414-929 852 ntGCF_018141605::NZ_CP065397.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018141605::NZ_CP065397.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP065397.1All displayed genes belong to this local TCS context.
Neighborhood span926 414-929 852 nt3 439 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
926 414 nt929 852 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I3K78_RS03890GCF_018141605#I3K78_RS03890
RRNarLCurrent focus
926 414-927 160 nt · Reverse (-)
I3K78_RS03895GCF_018141605#I3K78_RS03895
HKClassic
927 237-929 852 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018141585#I3K77_RS03865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0749023
Simplified PFAM architecture for RROC_0749023
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0749023
- Positioned domains: Response_reg 9-132 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_018141585#I3K77_RS03865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_018141605
AssemblyASM1814160v1 · Complete Genomehaploid
Genome composition2 561 296 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key