1 Response_reg#1
5-116 aa · 112 aa · 91.8% of protein
Raw token
Response_reg:5:1.56e-29:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSN03_RS08340
Response regulator, CheY family
Bacillus nitratireducens · GCF_018141025
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018141025#GSN03_RS08340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 122 aa (91.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.56e-29:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018141025::NZ_CP047366.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1624355-1624723Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSN03_08250RefSeq proteinWP_000940574.1
Context group ID
GCF_018141025::NZ_CP047366.1::G00019Context members
GSN03_RS08340
Partner locus tags
GSN03_RS08340
Partner old locus tags
GSN03_08250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000940574.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSN03_RS08340Primary locus identifier stored in the genes table.
Old locus tagGSN03_08250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP047366.1Sequence record reported by the local genomic context database.
Genomic interval1 624 355-1 624 723 nt369 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 624 355-1 624 723 ntGCF_018141025::NZ_CP047366.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018141025::NZ_CP047366.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP047366.1All displayed genes belong to this local TCS context.
Neighborhood span1 624 355-1 624 723 nt369 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 624 355 nt1 624 723 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GSN03_RS08340GCF_018141025#GSN03_RS08340
RRCheYCurrent focus
1 624 355-1 624 723 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS05545Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2405120
Simplified PFAM architecture for RROC_2405120
PFAM domain coverage: 112 / 122 aa (91.8%)
1 aa122 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_2405120
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS05545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_018141025
AssemblyASM1814102v1 · Complete Genomehaploid
Genome composition5 511 760 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 112 · HK 62 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key