1 HisKA#1
356-414 aa · 59 aa · 10.2% of protein
Raw token
HisKA:356:0.000000000228:414:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSN03_RS05820
Histidine kinase, Classic
Bacillus nitratireducens · GCF_018141025
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018141025#GSN03_RS05820Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 578 aa (28.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa578 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
471-578 aa · 108 aa · 18.7% of protein
Raw token
HATPase_c:471:4.65e-31:578:108:109- Raw architecture: HisKA:356:0.000000000228:414:59:64#HATPase_c:471:4.65e-31:578:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018141025::NZ_CP047366.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1147982-1150429Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSN03_05755RefSeq proteinWP_212089573.1
Context group ID
GCF_018141025::NZ_CP047366.1::G00012Context members
GSN03_RS05820GSN03_RS05825
Partner locus tags
GSN03_RS05820GSN03_RS05825
Partner old locus tags
GSN03_05755GSN03_05760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_212089573.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSN03_RS05820Primary locus identifier stored in the genes table.
Old locus tagGSN03_05755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP047366.1Sequence record reported by the local genomic context database.
Genomic interval1 147 982-1 149 718 nt1 737 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 147 982-1 150 429 ntGCF_018141025::NZ_CP047366.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018141025::NZ_CP047366.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP047366.1All displayed genes belong to this local TCS context.
Neighborhood span1 147 982-1 150 429 nt2 448 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 147 982 nt1 150 429 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSN03_RS05820GCF_018141025#GSN03_RS05820
HKClassicCurrent focus
1 147 982-1 149 718 nt · Reverse (-)
GSN03_RS05825GCF_018141025#GSN03_RS05825
RROmpR
1 149 728-1 150 429 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018141025#GSN03_RS05820The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1174488
Simplified PFAM architecture for HKOC_1174488
PFAM domain coverage: 166 / 578 aa (28.7%)
1 aa578 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-414] | HATPase_c[471-577]
- Domain count: 2
- Matched identifier: HKOC_1174488
- Positioned domains: HisKA 356-414 ; HATPase_c 471-577
Cluster members and taxonomy
Representative gene: GCF_018141025#GSN03_RS05820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_018141025
AssemblyASM1814102v1 · Complete Genomehaploid
Genome composition5 511 760 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 112 · HK 62 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key