1 HisKA#1
186-253 aa · 68 aa · 16.5% of protein
Raw token
HisKA:186:0.00000000000000502:253:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSN03_RS03190
Histidine kinase, Classic
Bacillus nitratireducens · GCF_018141025
ClassHKTypeClassicLength411 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018141025#GSN03_RS03190Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length411 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 411 aa (43.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa411 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
298-409 aa · 112 aa · 27.3% of protein
Raw token
HATPase_c:298:6.17e-30:409:112:109- Raw architecture: HisKA:186:0.00000000000000502:253:68:64#HATPase_c:298:6.17e-30:409:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018141025::NZ_CP047366.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span617701-619619Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSN03_03155RefSeq proteinWP_212089118.1
Context group ID
GCF_018141025::NZ_CP047366.1::G00006Context members
GSN03_RS03185GSN03_RS03190
Partner locus tags
GSN03_RS03185GSN03_RS03190
Partner old locus tags
GSN03_03150GSN03_03155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_212089118.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSN03_RS03190Primary locus identifier stored in the genes table.
Old locus tagGSN03_03155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP047366.1Sequence record reported by the local genomic context database.
Genomic interval618 384-619 619 nt1 236 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span617 701-619 619 ntGCF_018141025::NZ_CP047366.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018141025::NZ_CP047366.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP047366.1All displayed genes belong to this local TCS context.
Neighborhood span617 701-619 619 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
617 701 nt619 619 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSN03_RS03185GCF_018141025#GSN03_RS03185
RROmpR
617 701-618 372 nt · Forward (+)
GSN03_RS03190GCF_018141025#GSN03_RS03190
HKClassicCurrent focus
618 384-619 619 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018141025#GSN03_RS03190The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2348378
Simplified PFAM architecture for HKOC_2348378
PFAM domain coverage: 177 / 411 aa (43.1%)
1 aa411 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[187-252] | HATPase_c[298-408]
- Domain count: 2
- Matched identifier: HKOC_2348378
- Positioned domains: HisKA 187-252 ; HATPase_c 298-408
Cluster members and taxonomy
Representative gene: GCF_018141025#GSN03_RS03190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_018141025
AssemblyASM1814102v1 · Complete Genomehaploid
Genome composition5 511 760 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 112 · HK 62 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key