1 HisKA#1
18-83 aa · 66 aa · 27.7% of protein
Raw token
HisKA:18:0.0000000000000016:83:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KDJ92_RS12820
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_018140675
ClassHKTypeClassicLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018140675#KDJ92_RS12820Stable P2CS identifier used across views.
GenomeGCF_018140675Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 238 aa (73.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
128-237 aa · 110 aa · 46.2% of protein
Raw token
HATPase_c:128:2.82e-23:237:110:109- Raw architecture: HisKA:18:0.0000000000000016:83:66:64#HATPase_c:128:2.82e-23:237:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018140675::NZ_CP073283.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span930022-930738Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_018140675::NZ_CP073283.1::G00012Context members
KDJ92_RS12820
Partner locus tags
KDJ92_RS12820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234933066.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKDJ92_RS12820Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP073283.1Sequence record reported by the local genomic context database.
Genomic interval930 022-930 738 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span930 022-930 738 ntGCF_018140675::NZ_CP073283.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018140675::NZ_CP073283.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP073283.1All displayed genes belong to this local TCS context.
Neighborhood span930 022-930 738 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
930 022 nt930 738 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KDJ92_RS12820GCF_018140675#KDJ92_RS12820
HKClassicCurrent focus
930 022-930 738 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_023205855#HUE60_RS05385Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2184220
Simplified PFAM architecture for HKOC_2184220
PFAM domain coverage: 174 / 429 aa (40.6%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-272] | HATPase_c[319-428]
- Domain count: 2
- Matched identifier: HKOC_2184220
- Positioned domains: HisKA 209-272 ; HATPase_c 319-428
Cluster members and taxonomy
Representative gene: GCF_023205855#HUE60_RS05385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_018140675
AssemblyASM1814067v1 · Complete Genomehaploid
Genome composition2 770 240 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key