1 Response_reg#1
23-130 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:23:2.24e-30:130:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KDJ92_RS04270
Response regulator OmpR family
Bifidobacterium longum subsp. infantis · GCF_018140675
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018140675#KDJ92_RS04270Stable P2CS identifier used across views.
GenomeGCF_018140675Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 240 aa (75.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
165-237 aa · 73 aa · 30.4% of protein
Raw token
Trans_reg_C:165:5.61e-23:237:75:77- Raw architecture: Response_reg:23:2.24e-30:130:111:111#Trans_reg_C:165:5.61e-23:237:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018140675::NZ_CP073283.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span928725-929390Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKDJ92_04270RefSeq proteinWP_071478322.1
Context group ID
GCF_018140675::NZ_CP073283.1::G00011Context members
KDJ92_RS04270
Partner locus tags
KDJ92_RS04270
Partner old locus tags
KDJ92_04270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071478322.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKDJ92_RS04270Primary locus identifier stored in the genes table.
Old locus tagKDJ92_04270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP073283.1Sequence record reported by the local genomic context database.
Genomic interval928 725-929 390 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span928 725-929 390 ntGCF_018140675::NZ_CP073283.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018140675::NZ_CP073283.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP073283.1All displayed genes belong to this local TCS context.
Neighborhood span928 725-929 390 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
928 725 nt929 390 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KDJ92_RS04270GCF_018140675#KDJ92_RS04270
RROmpRCurrent focus
928 725-929 390 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018140675#KDJ92_RS04270The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0893606
Simplified PFAM architecture for RROC_0893606
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[23-130] | Trans_reg_C[165-236]
- Domain count: 2
- Matched identifier: RROC_0893606
- Positioned domains: Response_reg 23-130 ; Trans_reg_C 165-236
Cluster members and taxonomy
Representative gene: GCF_018140675#KDJ92_RS04270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_018140675
AssemblyASM1814067v1 · Complete Genomehaploid
Genome composition2 770 240 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key