1 sCache_like#1
34-132 aa · 99 aa · 22.8% of protein
Raw token
sCache_like:34:0.0000000855:132:105:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KBH66_RS08410
Histidine kinase, Classic
Anaerostipes sp. · GCF_018053785
ClassHKTypeClassicLength434 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018053785#KBH66_RS08410Stable P2CS identifier used across views.
GenomeGCF_018053785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length434 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage265 / 434 aa (61.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa434 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-292 aa · 67 aa · 15.4% of protein
Raw token
HisKA:226:7.26e-17:292:67:643 HATPase_c#3
336-434 aa · 99 aa · 22.8% of protein
Raw token
HATPase_c:336:4.1e-24:434:99:109- Raw architecture: sCache_like:34:0.0000000855:132:105:114#HisKA:226:7.26e-17:292:67:64#HATPase_c:336:4.1e-24:434:99:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018053785::NZ_JAGPKQ010000157.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span881-2858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKBH66_08345RefSeq proteinWP_287500220.1
Context group ID
GCF_018053785::NZ_JAGPKQ010000157.1::G00001Context members
KBH66_RS08405KBH66_RS08410
Partner locus tags
KBH66_RS08405KBH66_RS08410
Partner old locus tags
KBH66_08340KBH66_08345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287500220.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKBH66_RS08410Primary locus identifier stored in the genes table.
Old locus tagKBH66_08345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGPKQ010000157.1Sequence record reported by the local genomic context database.
Genomic interval1 558-2 858 nt1 301 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span881-2 858 ntGCF_018053785::NZ_JAGPKQ010000157.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018053785::NZ_JAGPKQ010000157.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGPKQ010000157.1All displayed genes belong to this local TCS context.
Neighborhood span881-2 858 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
881 nt2 858 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KBH66_RS08405GCF_018053785#KBH66_RS08405
RROmpR
881-1 561 nt · Forward (+)
KBH66_RS08410GCF_018053785#KBH66_RS08410
HKClassicCurrent focus
1 558-2 858 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS13775Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1937169
Simplified PFAM architecture for HKOC_1937169
PFAM domain coverage: 175 / 452 aa (38.7%)
1 aa452 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[226-291] | HATPase_c[339-447]
- Domain count: 2
- Matched identifier: HKOC_1937169
- Positioned domains: HisKA 226-291 ; HATPase_c 339-447
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS13775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 872 530 · GCF_018053785
AssemblyASM1805378v1 · Scaffoldhaploid
Genome composition1 714 034 bp · 38,0% GCAnaerostipes sp.
Signal transduction countsGenes 33 · HK 14 · RR 18CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key