1 Response_reg#1
8-81 aa · 74 aa · 87.1% of protein
Raw token
Response_reg:8:5.21e-20:81:74:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KBH66_RS06490
Response regulator, CheY family
Anaerostipes sp. · GCF_018053785
ClassRRTypeCheYLength85 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018053785#KBH66_RS06490Stable P2CS identifier used across views.
GenomeGCF_018053785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length85 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage74 / 85 aa (87.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa85 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:8:5.21e-20:81:74:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018053785::NZ_JAGPKQ010000082.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6982-7239Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKBH66_06465RefSeq proteinWP_287499930.1
Context group ID
GCF_018053785::NZ_JAGPKQ010000082.1::G00007Context members
KBH66_RS06490
Partner locus tags
KBH66_RS06490
Partner old locus tags
KBH66_06465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287499930.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKBH66_RS06490Primary locus identifier stored in the genes table.
Old locus tagKBH66_06465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGPKQ010000082.1Sequence record reported by the local genomic context database.
Genomic interval6 982-7 239 nt258 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 982-7 239 ntGCF_018053785::NZ_JAGPKQ010000082.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018053785::NZ_JAGPKQ010000082.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGPKQ010000082.1All displayed genes belong to this local TCS context.
Neighborhood span6 982-7 239 nt258 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 982 nt7 239 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KBH66_RS06490GCF_018053785#KBH66_RS06490
RRCheYCurrent focus
6 982-7 239 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018053785#KBH66_RS06490The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2475174
Simplified PFAM architecture for RROC_2475174
PFAM domain coverage: 74 / 85 aa (87.1%)
1 aa85 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-80]
- Domain count: 1
- Matched identifier: RROC_2475174
- Positioned domains: Response_reg 7-80
Cluster members and taxonomy
Representative gene: GCF_018053785#KBH66_RS06490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 872 530 · GCF_018053785
AssemblyASM1805378v1 · Scaffoldhaploid
Genome composition1 714 034 bp · 38,0% GCAnaerostipes sp.
Signal transduction countsGenes 33 · HK 14 · RR 18CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key