1 Response_reg#1
4-117 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:4:4.51e-31:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KBH66_RS03935
Response regulator, unclassified
Anaerostipes sp. · GCF_018053785
ClassRRTypeunclassifiedLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018053785#KBH66_RS03935Stable P2CS identifier used across views.
GenomeGCF_018053785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 539 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-486 aa · 43 aa · 8.0% of protein
Raw token
HTH_AraC:444:0.000000000411:486:43:423 HTH_AraC#3
500-535 aa · 36 aa · 6.7% of protein
Raw token
HTH_AraC:500:0.000000227:535:36:42- Raw architecture: Response_reg:4:4.51e-31:117:114:111#HTH_AraC:444:0.000000000411:486:43:42#HTH_AraC:500:0.000000227:535:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018053785::NZ_JAGPKQ010000032.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8154-11239Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKBH66_03925RefSeq proteinWP_055072348.1
Context group ID
GCF_018053785::NZ_JAGPKQ010000032.1::G00013Context members
KBH66_RS03930KBH66_RS03935
Partner locus tags
KBH66_RS03930KBH66_RS03935
Partner old locus tags
KBH66_03920KBH66_03925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055072348.1Primary protein accession used for annex mappings.
UniProt accessionA0A173RL48Primary UniProt accession resolved in the annex database.
UniProt IDA0A173RL48_ANAHADisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKBH66_RS03935Primary locus identifier stored in the genes table.
Old locus tagKBH66_03925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGPKQ010000032.1Sequence record reported by the local genomic context database.
Genomic interval9 620-11 239 nt1 620 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 154-11 239 ntGCF_018053785::NZ_JAGPKQ010000032.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018053785::NZ_JAGPKQ010000032.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGPKQ010000032.1All displayed genes belong to this local TCS context.
Neighborhood span8 154-11 239 nt3 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 154 nt11 239 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KBH66_RS03930GCF_018053785#KBH66_RS03930
HKClassic
8 154-9 620 nt · Reverse (-)
KBH66_RS03935GCF_018053785#KBH66_RS03935
RRunclassifiedCurrent focus
9 620-11 239 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405635#ARA30_RS02680Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0091751
Simplified PFAM architecture for RROC_0091751
PFAM domain coverage: 320 / 539 aa (59.4%)
1 aa539 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[163-290] | HTH_18[459-537]
- Domain count: 3
- Matched identifier: RROC_0091751
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 163-290 ; GGDEF_2 163-290 ; HTH_18 459-537 ; HTH_18 459-537
Cluster members and taxonomy
Representative gene: GCF_001405635#ARA30_RS02680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 872 530 · GCF_018053785
AssemblyASM1805378v1 · Scaffoldhaploid
Genome composition1 714 034 bp · 38,0% GCAnaerostipes sp.
Signal transduction countsGenes 33 · HK 14 · RR 18CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key