1 HisKA#1
337-403 aa · 67 aa · 9.3% of protein
Raw token
HisKA:337:0.000000000000229:403:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KBH66_RS03635
Histidine kinase, Hybrid
Anaerostipes sp. · GCF_018053785
ClassHKTypeHybridLength718 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018053785#KBH66_RS03635Stable P2CS identifier used across views.
GenomeGCF_018053785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length718 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 718 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa718 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
450-567 aa · 118 aa · 16.4% of protein
Raw token
HATPase_c:450:4.68e-26:567:118:1093 Response_reg#3
591-708 aa · 118 aa · 16.4% of protein
Raw token
Response_reg:591:5.81e-30:708:118:111- Raw architecture: HisKA:337:0.000000000000229:403:67:64#HATPase_c:450:4.68e-26:567:118:109#Response_reg:591:5.81e-30:708:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018053785::NZ_JAGPKQ010000028.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8609-10765Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKBH66_03625RefSeq proteinWP_287499476.1
Context group ID
GCF_018053785::NZ_JAGPKQ010000028.1::G00011Context members
KBH66_RS03635
Partner locus tags
KBH66_RS03635
Partner old locus tags
KBH66_03625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287499476.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKBH66_RS03635Primary locus identifier stored in the genes table.
Old locus tagKBH66_03625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGPKQ010000028.1Sequence record reported by the local genomic context database.
Genomic interval8 609-10 765 nt2 157 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 609-10 765 ntGCF_018053785::NZ_JAGPKQ010000028.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018053785::NZ_JAGPKQ010000028.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGPKQ010000028.1All displayed genes belong to this local TCS context.
Neighborhood span8 609-10 765 nt2 157 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 609 nt10 765 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KBH66_RS03635GCF_018053785#KBH66_RS03635
HKHybridCurrent focus
8 609-10 765 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018053785#KBH66_RS03635The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0737295
Simplified PFAM architecture for HKOC_0737295
PFAM domain coverage: 300 / 718 aa (41.8%)
1 aa718 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[337-403] | HATPase_c[451-566] | Response_reg[591-707]
- Domain count: 3
- Matched identifier: HKOC_0737295
- Positioned domains: HisKA 337-403 ; HATPase_c 451-566 ; Response_reg 591-707
Cluster members and taxonomy
Representative gene: GCF_018053785#KBH66_RS03635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 872 530 · GCF_018053785
AssemblyASM1805378v1 · Scaffoldhaploid
Genome composition1 714 034 bp · 38,0% GCAnaerostipes sp.
Signal transduction countsGenes 33 · HK 14 · RR 18CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key