1 Response_reg#1
3-103 aa · 101 aa · 46.1% of protein
Raw token
Response_reg:3:8.65e-25:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J7M37_RS06555
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_017743235
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017743235#J7M37_RS06555Stable P2CS identifier used across views.
GenomeGCF_017743235Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 219 aa (71.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-213 aa · 56 aa · 25.6% of protein
Raw token
HTH_LUXR:158:3.11e-21:213:56:58- Raw architecture: Response_reg:3:8.65e-25:103:101:111#HTH_LUXR:158:3.11e-21:213:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017743235::NZ_CP072504.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1522313-1524321Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ7M37_06555RefSeq proteinWP_033524130.1
Context group ID
GCF_017743235::NZ_CP072504.1::G00013Context members
J7M37_RS06555J7M37_RS06560
Partner locus tags
J7M37_RS06555J7M37_RS06560
Partner old locus tags
J7M37_06555J7M37_06560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033524130.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5HMJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5HMJ5_BIFPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ7M37_RS06555Primary locus identifier stored in the genes table.
Old locus tagJ7M37_06555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072504.1Sequence record reported by the local genomic context database.
Genomic interval1 522 313-1 522 972 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 522 313-1 524 321 ntGCF_017743235::NZ_CP072504.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017743235::NZ_CP072504.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072504.1All displayed genes belong to this local TCS context.
Neighborhood span1 522 313-1 524 321 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 522 313 nt1 524 321 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J7M37_RS06555GCF_017743235#J7M37_RS06555
RRNarLCurrent focus
1 522 313-1 522 972 nt · Reverse (-)
J7M37_RS06560GCF_017743235#J7M37_RS06560
HKClassic
1 522 972-1 524 321 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173435#BIFPSEUDO_RS02845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1767696
Simplified PFAM architecture for RROC_1767696
PFAM domain coverage: 156 / 219 aa (71.2%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1767696
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 160-213 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_000173435#BIFPSEUDO_RS02845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_017743235
AssemblyASM1774323v1 · Complete Genomehaploid
Genome composition2 292 936 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key