1 Response_reg#1
3-111 aa · 109 aa · 54.0% of protein
Raw token
Response_reg:3:0.00000000000000462:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EY648_RS02665
Response regulator NarL family
Enterococcus faecalis · GCF_017642305
ClassRRTypeNarLLength202 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017642305#EY648_RS02665Stable P2CS identifier used across views.
GenomeGCF_017642305Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length202 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 202 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa202 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
138-191 aa · 54 aa · 26.7% of protein
Raw token
HTH_LUXR:138:0.00000000000017:191:54:58- Raw architecture: Response_reg:3:0.00000000000000462:111:111:111#HTH_LUXR:138:0.00000000000017:191:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017642305::NZ_SIXO01000002.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span157166-157774Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEY648_02800RefSeq proteinWP_002366128.1
Context group ID
GCF_017642305::NZ_SIXO01000002.1::G00008Context members
EY648_RS02665
Partner locus tags
EY648_RS02665
Partner old locus tags
EY648_02800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002366128.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEY648_RS02665Primary locus identifier stored in the genes table.
Old locus tagEY648_02800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SIXO01000002.1Sequence record reported by the local genomic context database.
Genomic interval157 166-157 774 nt609 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span157 166-157 774 ntGCF_017642305::NZ_SIXO01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017642305::NZ_SIXO01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SIXO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span157 166-157 774 nt609 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 166 nt157 774 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EY648_RS02665GCF_017642305#EY648_RS02665
RRNarLCurrent focus
157 166-157 774 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157275#EFFG_RS06865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2114793
Simplified PFAM architecture for RROC_2114793
PFAM domain coverage: 164 / 202 aa (81.2%)
1 aa202 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-113] | GerE[137-189]
- Domain count: 2
- Matched identifier: RROC_2114793
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; GerE 137-189 ; GerE 137-189
Cluster members and taxonomy
Representative gene: GCF_000157275#EFFG_RS06865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_017642305
AssemblyASM1764230v1 · Scaffoldhaploid
Genome composition3 007 308 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 31 · HK 13 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key