1 Response_reg#1
3-113 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:3:2.59e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EY648_RS00995
Response regulator OmpR family
Enterococcus faecalis · GCF_017642305
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017642305#EY648_RS00995Stable P2CS identifier used across views.
GenomeGCF_017642305Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 239 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-233 aa · 70 aa · 29.3% of protein
Raw token
Trans_reg_C:164:5.08e-37:233:72:77- Raw architecture: Response_reg:3:2.59e-28:113:111:111#Trans_reg_C:164:5.08e-37:233:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017642305::NZ_SIXO01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span194979-197167Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEY648_01035RefSeq proteinWP_002381953.1
Context group ID
GCF_017642305::NZ_SIXO01000001.1::G00003Context members
EY648_RS00995EY648_RS01000
Partner locus tags
EY648_RS00995EY648_RS01000
Partner old locus tags
EY648_01035EY648_01040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002381953.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TKS5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TKS5_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEY648_RS00995Primary locus identifier stored in the genes table.
Old locus tagEY648_01035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SIXO01000001.1Sequence record reported by the local genomic context database.
Genomic interval194 979-195 698 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span194 979-197 167 ntGCF_017642305::NZ_SIXO01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017642305::NZ_SIXO01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SIXO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span194 979-197 167 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
194 979 nt197 167 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EY648_RS00995GCF_017642305#EY648_RS00995
RROmpRCurrent focus
194 979-195 698 nt · Forward (+)
EY648_RS01000GCF_017642305#EY648_RS01000
HKClassic
195 698-197 167 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS06075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905297
Simplified PFAM architecture for RROC_0905297
PFAM domain coverage: 182 / 239 aa (76.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-114] | Trans_reg_C[164-233]
- Domain count: 2
- Matched identifier: RROC_0905297
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; Trans_reg_C 164-233 ; Trans_reg_C 164-233
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS06075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_017642305
AssemblyASM1764230v1 · Scaffoldhaploid
Genome composition3 007 308 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 31 · HK 13 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key