1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:2.12e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5O10_RS11890
Response regulator OmpR family
Clostridioides difficile · GCF_017592625
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017592625#J5O10_RS11890Stable P2CS identifier used across views.
GenomeGCF_017592625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:2.62e-31:227:77:77- Raw architecture: Response_reg:4:2.12e-33:113:111:111#Trans_reg_C:151:2.62e-31:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017592625::NZ_CP107552.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2530594-2533554Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5O10_011885RefSeq proteinWP_003423181.1
Context group ID
GCF_017592625::NZ_CP107552.1::G00033Context members
J5O10_RS11885J5O10_RS11890
Partner locus tags
J5O10_RS11885J5O10_RS11890
Partner old locus tags
J5O10_011880J5O10_011885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003423181.1Primary protein accession used for annex mappings.
UniProt accessionD5Q309Primary UniProt accession resolved in the annex database.
UniProt IDD5Q309_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5O10_RS11890Primary locus identifier stored in the genes table.
Old locus tagJ5O10_011885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP107552.1Sequence record reported by the local genomic context database.
Genomic interval2 532 862-2 533 554 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 530 594-2 533 554 ntGCF_017592625::NZ_CP107552.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017592625::NZ_CP107552.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP107552.1All displayed genes belong to this local TCS context.
Neighborhood span2 530 594-2 533 554 nt2 961 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 530 594 nt2 533 554 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5O10_RS11885GCF_017592625#J5O10_RS11885
HKClassic
2 530 594-2 532 666 nt · Reverse (-)
J5O10_RS11890GCF_017592625#J5O10_RS11890
RROmpRCurrent focus
2 532 862-2 533 554 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0211235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200140
Simplified PFAM architecture for RROC_1200140
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1200140
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0211235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_017592625
AssemblyASM1759262v2 · Complete Genomehaploid
Genome composition4 071 782 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key